RetrogeneDB ID: | retro_sara_718 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_28062:529..1519(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1G | ||
Ensembl ID: | ENSSARG00000011232 | ||
Aliases: | None | ||
Description: | eukaryotic translation elongation factor 1 gamma [Source:HGNC Symbol;Acc:3213] |
Percent Identity: | 87.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VPAFEGDDGFCVFESNAIAYYVSNEE-LRGSTPEA-AAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNK |
VPAFEGD.GFCVFESNAIAYYV.......G..P....A..VQWVSFADSD.VPPASTWVFPTLGIMHHNK | |
Retrocopy | VPAFEGDEGFCVFESNAIAYYVREQRGAAGQHPRGRSAGGVQWVSFADSDSVPPASTWVFPTLGIMHHNK |
Parental | QATENAKEEVKRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQSFPNTNRWFLTCI |
QATE.AKEEVKRILGLLDAH.KTRTFLVGERVTLADITVVCTLLWLYKQVLE.SFRQSFP.TNRWFLTCI | |
Retrocopy | QATEDAKEEVKRILGLLDAHPKTRTFLVGERVTLADITVVCTLLWLYKQVLESSFRQSFPSTNRWFLTCI |
Parental | NQPQFRTVLGEVKLCEKMAQFDAKK-FAESQPKKETPRKEKGSREEKQKPQAERKEEKKAAAPAPEDEMD |
NQPQFR.VLGE.KL..KMAQFDA...FAESQPK.ETPRKEKGSREEK.KPQAERKEEK.AAAPAPEDEMD | |
Retrocopy | NQPQFRMVLGELKLRGKMAQFDARR<FAESQPKEETPRKEKGSREEKHKPQAERKEEKEAAAPAPEDEMD |
Parental | ECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNEDTLSVALPYFWEHFDKDGWSLWFSEYRFPEELTQ |
ECEQALAAEPKAK.P.AHLPKSTFVLDEFKR.YS.EDTLSVALPYFWEH.DKD.WSLWFSEY.FPEELTQ | |
Retrocopy | ECEQALAAEPKAKGPLAHLPKSTFVLDEFKREYSKEDTLSVALPYFWEHLDKDSWSLWFSEYCFPEELTQ |
Parental | TFMSCNLITGMFQRLDKLRKNAFA-SVILFGTN-SSSISGIWVFRGQELAFP |
TF.SCNLITGMF.RLDKLRKNAFA.SVILFGTN.SSSISGIWVFRGQELAFP | |
Retrocopy | TFTSCNLITGMFRRLDKLRKNAFA>SVILFGTNSSSSISGIWVFRGQELAFP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015834 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000018949 | 6 retrocopies | |
Latimeria chalumnae | ENSLACG00000014700 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007691 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003528 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000020959 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000003768 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000020075 | 8 retrocopies | |
Sorex araneus | ENSSARG00000011232 | 1 retrocopy |
retro_sara_718 ,
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