RetrogeneDB ID: | retro_rnor_1312 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 17:59522986..59523995(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000046329 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eef1g | ||
Ensembl ID: | ENSRNOG00000020075 | ||
Aliases: | None | ||
Description: | Elongation factor 1-gamma [Source:UniProtKB/Swiss-Prot;Acc:Q68FR6] |
Percent Identity: | 89.09 % |
Parental protein coverage: | 76.89 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRI |
VFESNAIAY..SNEEL.GSTPEAAAQVVQ.VSFA.SDIVPPA.TWV.PTLGIMHHNK.ATENA.EEVKRI | |
Retrocopy | VFESNAIAYCLSNEELQGSTPEAAAQVVQRVSFAESDIVPPAGTWVIPTLGIMHHNK*ATENAEEEVKRI |
Parental | LGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAILGEVK |
LGLLDTHLKTRTFLVGERVTL..ITVVCTLLWLYKQVLE.SFRQAFPN.N.WFLTCINQPQFRAILGEVK | |
Retrocopy | LGLLDTHLKTRTFLVGERVTLTGITVVCTLLWLYKQVLELSFRQAFPNINQWFLTCINQPQFRAILGEVK |
Parental | LCEKMAQFDAKKFAESQPKKDTPRKEKGSREEKQKPQTERKEEKKAAAPAPEEEMDECEQALAAEPKAKD |
LC.KMAQFDAKKFAE.QP.KDTPRKEKGSREEKQKPQTERKEEK.AAAPAPEEEM.ECEQALAAEPKAKD | |
Retrocopy | LCKKMAQFDAKKFAERQPEKDTPRKEKGSREEKQKPQTERKEEKEAAAPAPEEEMGECEQALAAEPKAKD |
Parental | -PFAHLPKSTFVLDEFKRKYSNEDTLSVALPY-FWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMF |
.PFAHLPKST.VLDEFKR.YSNED.LSVALP..FWEHFDKDGWSLWYAEYRF.EELTQTFMSCN.ITGMF | |
Retrocopy | <PFAHLPKSTVVLDEFKRTYSNEDVLSVALPF<FWEHFDKDGWSLWYAEYRFCEELTQTFMSCNPITGMF |
Parental | QRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQDLAFPLSPDWQVDY-ESYTWRKLDP |
QRLDKLRKNAFASVILFGTN.SSSISGVWVFRGQDLAFP.SPDWQVD..E...W...DP | |
Retrocopy | QRLDKLRKNAFASVILFGTNDSSSISGVWVFRGQDLAFPQSPDWQVDMAETGFW*RGDP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .14 RPM | 200 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 220 .51 RPM |
SRP017611_liver | 0 .00 RPM | 123 .52 RPM |