RetrogeneDB ID: | retro_shar_124 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL849794.1:75542..76067(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSHAG00000003799 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000015218 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.43 % |
Parental protein coverage: | 94.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | HSETTKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIINAENKIVGIGYNGMPNGCSDDLLPWRRTA |
HSETTKKRDDYLEWPEYFMAVAFLSAQRSKDP.SQVGACI.N.ENKIVGIGYNGMPNGCSDDLLPWRRT. | |
Retrocopy | HSETTKKRDDYLEWPEYFMAVAFLSAQRSKDPHSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPWRRTV |
Parental | DSKLDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKEVIYMSDKYHDSDETTAA |
DSKLDTKYPY.CHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKEVIYMSDKYHDSDETTAA | |
Retrocopy | DSKLDTKYPYMCHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKEVIYMSDKYHDSDETTAA |
Parental | RLMFDLAGIKFRKFTPKYSKIVIDFDSINSRPSQK |
RL.FDLAGIKFRKFT.KYSKIVIDFDSI.SRPSQK | |
Retrocopy | RLTFDLAGIKFRKFTSKYSKIVIDFDSIDSRPSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000017516 | 3 retrocopies | |
Mus musculus | ENSMUSG00000031562 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013215 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015218 | 1 retrocopy |
retro_shar_124 ,
|
Tursiops truncatus | ENSTTRG00000001460 | 1 retrocopy |