>retro_shar_641
GAGTCTACAAAAGACTACAATCTATTAAAGGGACCTCAGAAGTTATTTGTTATGATTTTATCATTGGGCAAACCATTGTG
TGTGTGTGATGACTGGGATGTATGGAGATCATAATGAATTAAGTTCTGAAGTTTTTCTACTTAGTCAATCAATTTTCTGT
TGTTTCTTTGATTGTACTGCTGTCAGATGAACTTTTACAGGATGGTTACAACTCAGAGTTGGGTATTTCATTTTTAATTG
CTACTAATATATGTCAAACCATCATCCTGATGGTGTTTAGCCCCACTGCCATTAACGCTGGTAAAAGAACTGAGTTTGAG
GGTTCAATCATTGCTCCATTTCACTTATTGGTTAACAGAATAGACAAAACTCATATTCAAGAAGCCTTCCATCCATCACC
ATATTTCGCTCAGTCTCATGAAACCCATTGTTACATTCTTTGTGTTTGCTATTATTATATACCTTCAGGAATTTCATGTC
AATTTACCCATCAAGTCTGCTCAAAATTATACACAATACAGTAGTTATCCCATCAAGCTCTTCTCCAGTTTCAACATTCC
TATCATTCTTCAATCTGTCCTGTTTCTATATGTTATATTCCAGACGTCATTTGTCCAGTTTAGTGGCCACTTTTTATTTT
TATTAGAATAATGGTCTGATGGAATTGCAAAAGGTCCTGCATGTTACTACTTAATTAAAGTCCTATGTTAGTATGTTTCT
CCTCCAGAATATAAAAGTGCCATATTTGAAAATCCTGTCCATATTGTTTTCACATAATCTTTATGCTG
ORF - retro_shar_641 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
50.74 % |
Parental protein coverage: |
55.19 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | DTPKDRALFNGAQKLFGMIITIGQSI-VYVMTGMYGDPSEMGAGICLLITIQLF-VAGLIVLLLDELLQK |
| ...KD..L..G.QKLF.MI...G....V.VMTGMYGD..E.......L.....F.V..LIVLL.DELLQ. |
Retrocopy | ESTKDYNLLKGPQKLFVMILSLGKPL>VCVMTGMYGDHNELSSEV-FLLSQSIF>VVSLIVLLSDELLQD |
|
Parental | GYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTD-KVRALREAFYRQNLP |
| GY....GIS..IATNIC.TI....FSPT..N.G...EFEG.IIA.FHLL..R.D.K.............. |
Retrocopy | GYNSELGISFLIATNICQTIILMVFSPTAINAGKRTEFEGSIIAPFHLLVNRID>KLIFKKPSIHHHISL |
|
Parental | NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSA |
| .LM..I.T.FVFA..IY.Q.F.V.LPIKSA....QY..YPIKLF...NIPIILQS.L...LYVI.Q.... |
Retrocopy | SLMKPIVTFFVFAIIIYLQEFHVNLPIKSAQNYTQYSSYPIKLFSSFNIPIILQSVLF--LYVIFQTSFV |
|
Parental | RFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAV-VYIVFML |
| .FSG..L..LL..WSD....GPA..Y....LC.Y.SPPE......E.PVH.V...I.FML |
Retrocopy | QFSGHFLF-LLE*WSDGIAKGPACYYLIKVLC*YVSPPEYKSAIFENPVHIV<FHIIFML |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_641 was not experimentally validated.
Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.