RetrogeneDB ID: | retro_shar_676 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL856988.1:2416758..2417265(+) | ||
Located in intron of: | ENSSHAG00000016924 | ||
Retrocopyinformation | Ensembl ID: | ENSSHAG00000016938 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB35 | ||
Ensembl ID: | ENSSHAG00000018522 | ||
Aliases: | None | ||
Description: | RAB35, member RAS oncogene family [Source:HGNC Symbol;Acc:9774] |
Percent Identity: | 82.56 % |
Parental protein coverage: | 91.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | TFSGSYITTIGVDFKIRTVEING-EKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY-DVTSAESFVNV |
T..GS.ITT.GVDFKI.TVEING.EKVKLQIWDTAGQE.FR.ITS..Y.GT.G...V......A.SFVNV | |
Retrocopy | TLLGSHITTLGVDFKIQTVEING<EKVKLQIWDTAGQEHFRIITSRCYQGTPG-VIVV>TMSPAQSFVNV |
Parental | KRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL |
K.WLHEINQNCDDVCRILVGNKNDDPE.KVVETEDAYKFAG.MGIQ.F.TSAKENVNVEEMFNCITELVL | |
Retrocopy | KLWLHEINQNCDDVCRILVGNKNDDPEQKVVETEDAYKFAGKMGIQRFKTSAKENVNVEEMFNCITELVL |
Parental | RAKKENLAKQQQQQQNDVVKLTKNSKRKKRCC |
RAKKENL.K.QQQQQNDVVKLTKNS.RKKRCC | |
Retrocopy | RAKKENLVKGQQQQQNDVVKLTKNSNRKKRCC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Microcebus murinus | ENSMICG00000012472 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010376 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018522 | 1 retrocopy |
retro_shar_676 ,
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