RetrogeneDB ID: | retro_shar_68 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL867627.1:70845..71460(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSHAG00000003677 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB1B | ||
Ensembl ID: | ENSSHAG00000010376 | ||
Aliases: | None | ||
Description: | RAB1B, member RAS oncogene family [Source:HGNC Symbol;Acc:18370] |
Percent Identity: | 68.5 % |
Parental protein coverage: | 99.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SSSSDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR |
....DYLFKLLLIGDSGVGKSCLLLRFAD..Y...Y..TIGVDFKIRTI.L.GK..KLQIWDTAGQERF. | |
Retrocopy | NAECDYLFKLLLIGDSGVGKSCLLLRFADNKYSDDYACTIGVDFKIRTIQLNGKIVKLQIWDTAGQERFH |
Parental | TITSSYYRGAHGIIVVYDVTDQESYANVKQWLEEINRYASENVNKLLVGNKSDLTTKKVVDNPTAKEFAD |
TITSSYYRGAHG.I.VYDV...ES..NVKQWL.E.....SE...K.LVGNKSDL.T...VD...AKEFAD | |
Retrocopy | TITSSYYRGAHGVILVYDVSSLESFVNVKQWLVEVELRGSETTDKVLVGNKSDLVTERMVDSLMAKEFAD |
Parental | SLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKPASGGCC |
SLGIPFLETSAKNA.NVEQ.F.T.AAEI.........S....P.LK..S.PVK.A.GGCC | |
Retrocopy | SLGIPFLETSAKNAINVEQVFLTIAAEIREHLRCEPFSARDLPALKVNSSPVKMACGGCC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000001599 | 1 retrocopy | |
Homo sapiens | ENSG00000174903 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009755 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000000023 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008371 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003031 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003915 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010376 | 1 retrocopy |
retro_shar_68 ,
|
Sarcophilus harrisii | ENSSHAG00000018522 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011052 | 1 retrocopy | |
Drosophila melanogaster | FBgn0016700 | 1 retrocopy |