RetrogeneDB ID: | retro_shar_832 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL867714.1:9717..10145(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2C | ||
Ensembl ID: | ENSSHAG00000002117 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2C [Source:HGNC Symbol;Acc:15937] |
Percent Identity: | 80.56 % |
Parental protein coverage: | 71.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ILPLQMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFV-TPCYHPNV |
...L.MSGD.GI.AF.ESD.LFKW.GTIH.AAGTVYEDLRYKLSLEFP.GY.YNAPTVKFV.T.CYH.NV | |
Retrocopy | LMTLMMSGDNGIFAFSESDSLFKWIGTIHWAAGTVYEDLRYKLSLEFPRGYSYNAPTVKFVTTTCYHLNV |
Parental | DTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-TNPTAFK-KYLLETYMKQVT |
DTQGNIC.DILKDKW.ALYDVRTILLSIQSLLGEPNI.SPLNTHAAEL....P...K.KYLL..YMKQVT | |
Retrocopy | DTQGNICVDILKDKWLALYDVRTILLSIQSLLGEPNIKSPLNTHAAELFGQTPQPLK<KYLLKIYMKQVT |
Parental | SQEP |
SQEP | |
Retrocopy | SQEP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005054 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000014102 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000003164 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021023 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000017619 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000004989 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000013564 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002117 | 1 retrocopy |
retro_shar_832 ,
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