Parental gene:

UBE2C, ENSCPOG00000014102

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_45:12317878..12321569(+)


>ENSCPOG00000014102
ATGGCCTCCCAAAACCGCGACCCCGCTGCCGCTAGCGTTGCTGCGTCGCGTAAAGGGGCCGAGCCCAGCGGGGGCGCCGC
CCGGGGCCCTGTGGGCAAGAGGCTACAGCAGGAGCTGATGACCCTCATGATGTCTGGTGACAAAGGAATTTCTGCCTTCC
CTGAGTCAGACAACCTTTTCAAATGGATAGGGACCATCCACGGAGCAGCTGGCACAGTGTATGAAGACCTGCGGTATAAA
CTCTCCCTGGAGTTCCCCAGCGGCTACCCTTACAATGCGCCCACGGTGAAGTTCCTCACTCCCTGCTACCACCCCAATGT
GGACACCCAGGGCAACATCTGCTTGGACATCCTGAAGGACAAGTGGTCCGCTTTGTACGACGTCAGGACCATCCTACTGT
CCATCCAGAGCCTGCTAGGAGAACCCAACATTGACAGTCCTTTGAACACACATGCTGCGGAGCTCTGGAAAAACCCCACA
GCTTTTAAGAAGTACCTGCAAGAAACATACTCAAAGCAAGTCTCTAGCCAAGAGCCC

Library Parental gene expression (RPM)
SRP017611_brain 0 .63 RPM
SRP017611_kidney 2 .09 RPM
SRP017611_liver 1 .00 RPM
SRP040447_lung 6 .89 RPM
SRP040447_skeletal_muscle 1 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000005054 possible_ortholog 1 retrogene
retro_chof_902,
Dipodomys ordii ENSDORG00000011774 ortholog_one2one 4 retrogenes
retro_dord_157, retro_dord_386, retro_dord_421, retro_dord_84,
Echinops telfairi ENSETEG00000012346 possible_ortholog 18 retrogenes
retro_etel_1212, retro_etel_1500, retro_etel_1560, retro_etel_157, retro_etel_1634, retro_etel_1729, retro_etel_1853, retro_etel_1856, retro_etel_2013, retro_etel_221, retro_etel_321, retro_etel_324, retro_etel_400, retro_etel_628, retro_etel_689, retro_etel_764, retro_etel_824, retro_etel_909,
Homo sapiens ENSG00000175063 ortholog_one2one 3 retrogenes
retro_hsap_1474, retro_hsap_1922, retro_hsap_2935,
Gorilla gorilla ENSGGOG00000026061 ortholog_one2one 3 retrogenes
retro_ggor_1130, retro_ggor_1402, retro_ggor_2035,
Macropus eugenii ENSMEUG00000007177 ortholog_one2many 14 retrogenes
retro_meug_1021, retro_meug_1128, retro_meug_1203, retro_meug_1398, retro_meug_1435, retro_meug_145, retro_meug_1476, retro_meug_1504, retro_meug_1575, retro_meug_1773, retro_meug_1808, retro_meug_2034, retro_meug_334, retro_meug_645,
Myotis lucifugus ENSMLUG00000006715 ortholog_one2one 4 retrogenes
retro_mluc_2164, retro_mluc_2220, retro_mluc_600, retro_mluc_636,
Macaca mulatta ENSMMUG00000021023 possible_ortholog 4 retrogenes
retro_mmul_1345, retro_mmul_170, retro_mmul_1951, retro_mmul_777,
Monodelphis domestica ENSMODG00000013661 ortholog_one2many 6 retrogenes
retro_mdom_1549, retro_mdom_1552, retro_mdom_1732, retro_mdom_1970, retro_mdom_2020, retro_mdom_415,
Mus musculus ENSMUSG00000001403 ortholog_one2one 5 retrogenes
retro_mmus_1344, retro_mmus_1593, retro_mmus_1770, retro_mmus_2881, retro_mmus_3512,
Otolemur garnettii ENSOGAG00000004989 possible_ortholog 3 retrogenes
retro_ogar_2347, retro_ogar_249, retro_ogar_3067,
Ochotona princeps ENSOPRG00000014284 ortholog_one2one 4 retrogenes
retro_opri_1009, retro_opri_1055, retro_opri_222, retro_opri_50,
Pongo abelii ENSPPYG00000011071 ortholog_one2one 4 retrogenes
retro_pabe_1155, retro_pabe_1221, retro_pabe_1589, retro_pabe_2519,
Pan troglodytes ENSPTRG00000013564 ortholog_one2many 1 retrogene
retro_ptro_38,
Pteropus vampyrus ENSPVAG00000000369 ortholog_one2one 1 retrogene
retro_pvam_423,
Rattus norvegicus ENSRNOG00000015131 ortholog_one2one 5 retrogenes
retro_rnor_1390, retro_rnor_2131, retro_rnor_2470, retro_rnor_719, retro_rnor_864,
Sarcophilus harrisii ENSSHAG00000002117 possible_ortholog 1 retrogene
retro_shar_832,
Tursiops truncatus ENSTTRG00000015987 ortholog_one2one 1 retrogene
retro_ttru_1752,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_211 61.96 50.28
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2. retro_cpor_1007 78.03 72.63
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Download FASTA sequences of all ENSCPOG00000014102 retrocopies