>retro_slyc_5
ATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTTATGGTGCCTCAAACAAATGCATTTGGACATGA
TTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAA
CCTATGATTTTGTGAAGAAAATGAGAGAAGATTACATAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAA
TTATTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAAAGTGCTGAGGC
AATTAGAAAAGATTATCCTAATGAAGATTGGTTACACTTAACAGCCTTAATTCATGATTTGGGTAAAATATTAGTTTTAC
CTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTGCATTTGATGAATCAAATATT
CATCATAAATATTTTAAAGAAAATCAAGATTTCAACAACCCAATTTATAACACAAAAAATGGAATATATAATGATTCTAT
TGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTACATGGTTGCTAAAGAAAATGGTACAACATTAC
CATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGGTTATAAACATTTAATGAAT
GATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAA
TGTGGAAGAAGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGA
ORF - retro_slyc_5 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
79.71 % |
Parental protein coverage: |
90.16 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | DGFAVPETNAFGHNFRDYT-VESARQQGVENFYKINHFNQTYDYVSKMRVEYAKLDKAEMSIWECCELLN |
| D.F.VP.TNAFGH.FRDY....S.RQ.GVE.FYK..H.NQTYD.V.KMR..Y.KLDKA.MSIWECCELLN |
Retrocopy | DQFMVPQTNAFGHDFRDYNNAQSERQKGVEKFYKTQHINQTYDFVKKMREDYIKLDKAKMSIWECCELLN |
|
Parental | DVVDDSDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLLLPSFGELPQWAVVGDTFPVGC |
| DVVDDSDPDLDEPQIQHLLQSAEAIRKDYP.EDWLHLTALIHDLGK.L.LP.FG.LPQWAVVGDTFP.GC |
Retrocopy | DVVDDSDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKILVLPKFGGLPQWAVVGDTFPLGC |
|
Parental | AFHDSIVHSKYFKENPDYNNTAYKSKFGVYSEGCGLDKVLMSWGHDDYMYLVAKENGTTLPSAGLFIIRY |
| AF..S..H.KYFKEN.D.NN..Y..K.G.Y....GL..V.MSWGHDDYMY.VAKENGTTLPSAGLFIIRY |
Retrocopy | AFDESNIHHKYFKENQDFNNPIYNTKNGIYNDSIGLENVMMSWGHDDYMYMVAKENGTTLPSAGLFIIRY |
|
Parental | HSFYALHKSGAYKELMNEEDKENLKWLHIFNKYDLYSKSKVQVNVEEVKPYYMSLIEKYFPAKLKW |
| HSFY.LHK.G.YK.LMN.ED.ENLKWLH.FNKYDLYSKSKV.VNVEEVKPYYMSLIEKYFPAKL.W |
Retrocopy | HSFYPLHKNGGYKHLMNDEDEENLKWLHVFNKYDLYSKSKVHVNVEEVKPYYMSLIEKYFPAKLRW |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum lycopersicum was not studied using RNA-Seq expression data.
Solanum lycopersicum was not studied using ChIP-Seq data.
Solanum lycopersicum was not studied using EST data.
Solanum lycopersicum was not studied using FANTOM5 data.
retro_slyc_5 was not experimentally validated.
Retrocopy orthology:
Solanum lycopersicum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.