>retro_stub_59
ATGACTATCCAACTAGAGGGAAAAAAAATCCAAGACCAAGACCAATTCATGGTGCCTCAAACAAATGCATTTGGACATAA
TTTTAGGGACTACAACAATGCACAAAGTGAAAGGCAAAAAGGGGTAGAAAAATTCTACAAAACACAACATATAAATCAAA
CATATGATTTTGTGAAGAAAATGAGAGAAGATTATACAAAATTAGACAAAGCAAAAATGAGCATATGGGAATGTTGTGAA
TTACTAAATGATGTTGTTGATGATAGTGATCCTGATTTAGATGAACCACAAATTCAACATTTATTACAGAGTGCTGAGGC
AATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTAACAGCCTTAATTCATGATTTAGGCAAAATATTAGTTTTAC
CTAAGTTTGGTGGTTTACCTCAATGGGCTGTTGTTGGTGACACATTCCCTTTAGGATGTTCATTTGATGAATCAAATATT
CACCATAAATATTTTAAAGAAAATCAAGATTTTAACAACTCAATTTACAACACAAAAAATGGAATATATAATGATTTTAT
TGGACTAGAAAATGTCATGATGTCATGGGGTCATGATGATTATATGTATATGGTTGCTAAAGAAAATGGTACAACATTAC
CATCAGCTGGACTTTTTATTATAAGGTATCATTCATTTTATCCATTGCATAAAAATGGAGCTTATAAACATTTGATGAAT
GATGAAGATGAAGAAAATTTGAAGTGGCTTCATGTTTTTAATAAATATGATTTGTATAGTAAAAGCAAAGTTCATGTTAA
TGTGGAAGAGGTAAAACCTTATTATATGTCTTTAATTGAGAAATATTTTCCAGCAAAGCTAAGGTGGTGA
ORF - retro_stub_59 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
81.52 % |
Parental protein coverage: |
91.06 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | DGFAVPQTNAFGHNFRDYT-VESARQQGVEFFYKINHFNQTYDYVSKMRVDYAKLDKAEMSIWECCELLN |
| D.F.VPQTNAFGHNFRDY....S.RQ.GVE.FYK..H.NQTYD.V.KMR.DY.KLDKA.MSIWECCELLN |
Retrocopy | DQFMVPQTNAFGHNFRDYNNAQSERQKGVEKFYKTQHINQTYDFVKKMREDYTKLDKAKMSIWECCELLN |
|
Parental | DVVDDSDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKVLLLPSFGELPQWAVVGDTFPVGC |
| DVVDDSDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGK.L.LP.FG.LPQWAVVGDTFP.GC |
Retrocopy | DVVDDSDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKILVLPKFGGLPQWAVVGDTFPLGC |
|
Parental | AFHDSIVHSKYFKENPDYNNPAYNSKFGVYSEGCGLDKVLMSWGHDDYMYLVAKENGTTLPSAGLFIIRY |
| .F..S..H.KYFKEN.D.NN..YN.K.G.Y....GL..V.MSWGHDDYMY.VAKENGTTLPSAGLFIIRY |
Retrocopy | SFDESNIHHKYFKENQDFNNSIYNTKNGIYNDFIGLENVMMSWGHDDYMYMVAKENGTTLPSAGLFIIRY |
|
Parental | HSFYALHKSGAYKELMNEEDKENLKWLHIFNKYDLYSKSKVQVNVEEVKPYYMSLIEKYFPAKLKW |
| HSFY.LHK.GAYK.LMN.ED.ENLKWLH.FNKYDLYSKSKV.VNVEEVKPYYMSLIEKYFPAKL.W |
Retrocopy | HSFYPLHKNGAYKHLMNDEDEENLKWLHVFNKYDLYSKSKVHVNVEEVKPYYMSLIEKYFPAKLRW |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum tuberosum was not studied using RNA-Seq expression data.
Solanum tuberosum was not studied using ChIP-Seq data.
Solanum tuberosum was not studied using EST data.
Solanum tuberosum was not studied using FANTOM5 data.
retro_stub_59 was not experimentally validated.
Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.