RetrogeneDB ID: | retro_slyc_65 | ||
Retrocopylocation | Organism: | Tomato (Solanum lycopersicum) | |
Coordinates: | 12:9084565..9084828(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Solyc06g069520.2 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.29 % |
Parental protein coverage: | 84.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KPYKPSPVAPQDLPIDYSGFIAVICGVFGA--MFRYKICSWL-AIIFSAQSLANMRNMENDLKQISMAMM |
K.YK.S.V.P.DLPIDY...I.VI.GVFGA....RYKIC..L..IIF..QS.AN.RNM.NDLKQISMAMM | |
Retrocopy | KSYKASLVGPLDLPIDYYNIIVVIFGVFGATLIIRYKIC*KL<VIIFNVQSIANIRNMKNDLKQISMAMM |
Parental | FGIMGLMTNYLGVGPRGSK |
F.I..LMTNYLGV....SK | |
Retrocopy | FRITNLMTNYLGVSCWESK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Solanum lycopersicum | Solyc06g069520.2 | 4 retrocopies |