RetrogeneDB ID: | retro_slyc_85 | ||
Retrocopylocation | Organism: | Tomato (Solanum lycopersicum) | |
Coordinates: | 6:34784987..34785203(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Solyc06g069520.2 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.44 % |
Parental protein coverage: | 68.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | YSGFIAVICGVFGAMF--RYKICSWLAIIFSAQSLANMRNMENDLKQISMAMMFGIMGLMTNYLGVGPRG |
Y.GFI.VI...F.AM....YKICS.L.IIFS.QS.AN.RNMENDLK.ISMAMMFGI..LMTNYLGV.... | |
Retrocopy | YHGFIVVIFDIFVAMLIIKYKICSRLVIIFSVQSIANIRNMENDLK*ISMAMMFGITELMTNYLGVSSWA |
Parental | SK |
SK | |
Retrocopy | SK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Solanum lycopersicum | Solyc06g069520.2 | 4 retrocopies |