>retro_sscr_601
AGAGGACTGGATTAAACATCTTTGGGTATATTTTTATTGGGATTTTTATTATGGAACATAGATAACATCTTTTGTGATTC
ATTGAGGAACTTTTCAAAGAAGGTGTCACCTATCATAGGTGTTACCCACAGTTTCACGCATGGTGGCATACTTTAACTGG
CCTTGGTTCTTCTCTTCACATCCTTTTCAGCTTATATACAACACTTTACCTGAGATACAGGCCAAAAGTAAAGTTTCTCT
TTAGAATCTGGCCAGTGATCTTGTTTGAGCCTCTCAGGAAGCAC
ORF - retro_sscr_601 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.66 % |
Parental protein coverage: |
54.24 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | RGLGYTSLGIFLMGFLLWNIDNIFCDSLRNFRKKVPPIIGVT-TQFHAWWHILTGLGSYLHILFSLYTRT |
| RGL..TSLGIFL.GFLLWNIDNIFCDSLRNF.KKV.PIIGVT..QFHAWWH.LTGLGS.LHILFSLYT.T |
Retrocopy | RGLD*TSLGIFLLGFLLWNIDNIFCDSLRNFSKKVSPIIGVT<PQFHAWWHTLTGLGSSLHILFSLYT-T |
|
Parental | LYLRYRPKVKFLFGIWPVILFEPLRKH |
| LYLRYRPKVKFLF.IWPVILFEPLRKH |
Retrocopy | LYLRYRPKVKFLFRIWPVILFEPLRKH |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP014902_placenta |
0 .00 RPM |
2 .39 RPM |
SRP014902_testis |
0 .00 RPM |
0 .99 RPM |
SRP018288_heart |
0 .00 RPM |
7 .81 RPM |
SRP018288_kidney |
0 .00 RPM |
7 .39 RPM |
SRP018288_liver |
0 .00 RPM |
1 .60 RPM |
SRP018288_lung |
0 .00 RPM |
8 .25 RPM |
SRP018856_adipose |
0 .00 RPM |
7 .94 RPM |
SRP035408_brain |
0 .00 RPM |
1 .24 RPM |
SRP035408_liver |
0 .00 RPM |
0 .68 RPM |
Sus scrofa was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_sscr_601 retrocopy.
Sus scrofa was not studied using FANTOM5 data.
retro_sscr_601 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_sscr_601 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.