>retro_sscr_865
TTCAGTTTTTTATTTAACATGATTTTTCTGTATCAGTACTGTTGAATGCTAGAAGAAGACTCTTTCAGAGGTCAAACAGC
AAACTTTGTATTTACGTTCCTTTTTGGTGGATTCTTAATGACTCTTTTTGGTTTGTGTTCGAGCTTAGTGTTCTTGGGCC
AGGCCTTTACAGTATTGCTTGTCTACGTGTGGAGCTGTAGGAACCCGTATGTCCGCATGAACTTCTTTGACCTTCTCAAT
TTCCAAGCTCCCTTTCTACCCTGGGTGCTTGTGGGCTTTTCCTTGTTGTTGGGGAACTCAATCCTTGTGGACCTCTGGGA
TATTGCAGTTGGACATGTATATTTTTTTCTTGGAAGATGTATTTCCCAATCAGCCTGGCAGAATAAGATTTCTGAAAGCA
CTGTCTGTTCTGCTGTTTTTGATA
ORF - retro_sscr_865 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
70.42 % |
Parental protein coverage: |
61.04 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | FSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMILLGLLGSLFFLGQALTAMLVYVWSRRSPR |
| FSF.FNM.F...YC.MLEE.SFRG.TA.FVF.FLFGG.LM.L.GL..SL.FLGQA.T..LVYVWS.R.P. |
Retrocopy | FSFLFNMIFLYQYC*MLEEDSFRGQTANFVFTFLFGGFLMTLFGLCSSLVFLGQAFTVLLVYVWSCRNPY |
|
Parental | VRVNFFGLLTFQAPFLPWALMGFSLLLGNSILVDLLGIAVGHIY-YFLEDVFPNQPGGKRLLLTPSFLKL |
| VR.NFF.LL.FQAPFLPW.L.GFSLLLGNSILVDL..IAVGH.Y..FLEDVFPNQPG..R.L...S.L.. |
Retrocopy | VRMNFFDLLNFQAPFLPWVLVGFSLLLGNSILVDLWDIAVGHVY>FFLEDVFPNQPGRIRFLKALSVLLF |
|
Parental | LL |
| L. |
Retrocopy | LI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP014902_placenta |
0 .66 RPM |
2 .39 RPM |
SRP014902_testis |
0 .42 RPM |
24 .47 RPM |
SRP018288_heart |
0 .16 RPM |
0 .13 RPM |
SRP018288_kidney |
0 .00 RPM |
2 .27 RPM |
SRP018288_liver |
0 .00 RPM |
0 .80 RPM |
SRP018288_lung |
0 .10 RPM |
6 .82 RPM |
SRP018856_adipose |
0 .08 RPM |
0 .18 RPM |
SRP035408_brain |
0 .06 RPM |
0 .06 RPM |
SRP035408_liver |
0 .38 RPM |
0 .53 RPM |
Sus scrofa was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_sscr_865 retrocopy.
Sus scrofa was not studied using FANTOM5 data.
retro_sscr_865 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_sscr_865 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.