RetrogeneDB ID:

retro_taes_156

Retrocopy
location
Organism:Wheat (Triticum aestivum)
Coordinates:7A:155850580..155850973(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Traes_5BL_8FFD203BD
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_taes_156
ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACCATCGACAATGTCAA
GGCCAAAATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCC
GCACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCAGGCTCCGTGGTGGCATGCAGATTTTT
GTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACTATCGACAACGTCAAGGCTAAGATCCA
GGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACC

ORF - retro_taes_156 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.21 %
Parental protein coverage: 85.62 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
RetrocopyMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV
ParentalLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKT
LRLRGG..I.VKTLTGK.I....E..DTID..K.....KEGIPP.QQRLI.AGKQL.D..T
RetrocopyLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Triticum aestivum was not studied using RNA-Seq expression data.
Triticum aestivum was not studied using ChIP-Seq data.
Triticum aestivum was not studied using EST data.
Triticum aestivum was not studied using FANTOM5 data.
retro_taes_156 was not experimentally validated.

Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species Parental gene accession Retrocopies number
Musa acuminata GSMUA_Achr3G30150_0011 retrocopy
Triticum aestivum Traes_5BL_8FFD203BD 4 retrocopies



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