RetrogeneDB ID: | retro_tbel_2254 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_107213:9032..9621(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHC | ||
Ensembl ID: | ENSTBEG00000011741 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase C [Source:HGNC Symbol;Acc:6544] |
Percent Identity: | 60.91 % |
Parental protein coverage: | 98.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSSVKEQLIENLT-EEDKVS-HSKITIVGAGAVGMACAISILLKDLADELALVDVATDKLKGEMMDLQHG |
M...K...I.....EE..V....KIT.VG.G.VGMACAISIL.K.LA..LALVDV...KLKGEM.D.QHG | |
Retrocopy | MATLKDKIIAPVAEEEATVP>NNKITVVGVGQVGMACAISILGKSLANKLALVDVLENKLKGEMIDQQHG |
Parental | SLFFSTSKITSGKDYSISANSKLVIVTAGARQQEGESRLALVQRNVNIMKSIIPTIVHYSPECKMLIVSN |
SLFF.T.KI...KDYS..ANSK.V.VTAG..QQE.E..L.LV.RN.N..K..IP..V.YSP.C....VSN | |
Retrocopy | SLFFLTPKIVADKDYSVIANSKVVVVTAGVCQQERENNLNLVKRNINVFKFFIPQFVKYSPDCIIIVVSN |
Parental | PVDILTYVVWKLSGLPVTRVIGSGCNLDSARFRYLIGEKLGVHATSCHGWIIGEHGD |
PVDILT.V.WKL.GL....VI.S.CNLDSARF.YL..EK.G...TSCH..I.GEHGD | |
Retrocopy | PVDILTHVTWKLNGLHKHCVIESRCNLDSARFYYLMAEKVGIYPTSCHR*ICGEHGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Rattus norvegicus | ENSRNOG00000013103 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000011741 | 24 retrocopies |
retro_tbel_1130, retro_tbel_1300, retro_tbel_1344, retro_tbel_1657, retro_tbel_2072, retro_tbel_2125, retro_tbel_2227, retro_tbel_2254 , retro_tbel_2367, retro_tbel_2433, retro_tbel_2640, retro_tbel_2775, retro_tbel_2859, retro_tbel_2877, retro_tbel_2960, retro_tbel_3042, retro_tbel_3188, retro_tbel_3468, retro_tbel_3683, retro_tbel_4189, retro_tbel_4323, retro_tbel_4557, retro_tbel_499, retro_tbel_676,
|
Tarsius syrichta | ENSTSYG00000008062 | 4 retrocopies |