RetrogeneDB ID: | retro_tbel_2900 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_122979:73300..73713(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASF1A | ||
Ensembl ID: | ENSTBEG00000000592 | ||
Aliases: | None | ||
Description: | anti-silencing function 1A histone chaperone [Source:HGNC Symbol;Acc:20995] |
Percent Identity: | 75.18 % |
Parental protein coverage: | 79.76 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | DLEWKIIYVGSAESEE-YDQVLDSVL-VGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQ |
DLEW.IIY..SAESE..YDQVLDS.L.VGPV.AGRHMFVFQAD.PNPGL..DA..V..TVVL..CTY..Q | |
Retrocopy | DLEW*IIYMNSAESED<YDQVLDSIL>VGPVLAGRHMFVFQADVPNPGLVSDANSVDITVVLTICTY*SQ |
Parental | EFIRVGYYVNNEYTETEL-RENPPV-KPDFSKLQRNILASNPR---VTRFHINWEDNTEKLEDAESSNPN |
EFIRVGY.VNNEYT.TEL...N.P..K.DFSKLQR.ILASNPR....TRFHINW.DNTEKL.DAESSNPN | |
Retrocopy | EFIRVGYCVNNEYTGTELSKNNLPI<KSDFSKLQRKILASNPREVTSTRFHINWNDNTEKLKDAESSNPN |
Parental | L |
L | |
Retrocopy | L |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013007 | 1 retrocopy | |
Felis catus | ENSFCAG00000023561 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013053 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000034346 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004979 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000592 | 2 retrocopies |
retro_tbel_2900 , retro_tbel_4175,
|