RetrogeneDB ID: | retro_tbel_3089 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_129653:277830..278289(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ORC6 | ||
Ensembl ID: | ENSTBEG00000000278 | ||
Aliases: | None | ||
Description: | origin recognition complex, subunit 6 [Source:HGNC Symbol;Acc:17151] |
Percent Identity: | 85.62 % |
Parental protein coverage: | 60.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GLAEPEVLRKAEEYSRLSQVK-VYLSA-HTETSNAVMCLDLAASCMKCPLDRAYLIKLSGLNKKMYQSCL |
G..EPEVLRKAEEY...SQVK.V.LSA..TET.NAVMCLDLAASCMKCP.DRAYLIKLSGLNKKMYQSCL | |
Retrocopy | GPTEPEVLRKAEEYLGQSQVKCVDLSACTTETRNAVMCLDLAASCMKCPMDRAYLIKLSGLNKKMYQSCL |
Parental | KSFECLLGLNSNIGIRDLAVQFSCTEAVNMASKILLSYESSLPQTQQVDLDLSRPLFTTAALLSACKL-K |
KSFEC.LGLNSNI.IRDLAV.FSCTEAVNMASKILLS.ESSL.QTQQV.L.LSRPLFTTAALLS.CK..K | |
Retrocopy | KSFECFLGLNSNIRIRDLAVEFSCTEAVNMASKILLSSESSLSQTQQVNLELSRPLFTTAALLSVCKIPK |
Parental | LKVDKNKMVATSG |
LKVD.NKMVATSG | |
Retrocopy | LKVD*NKMVATSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002944 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010859 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000012122 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000688 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000004207 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000000278 | 1 retrocopy |
retro_tbel_3089 ,
|
Tarsius syrichta | ENSTSYG00000005205 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000013294 | 1 retrocopy |