RetrogeneDB ID: | retro_tsyr_889 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_230684:3..483(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000001291 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ORC6 | ||
Ensembl ID: | ENSTSYG00000005205 | ||
Aliases: | None | ||
Description: | origin recognition complex, subunit 6 [Source:HGNC Symbol;Acc:17151] |
Percent Identity: | 75.93 % |
Parental protein coverage: | 64.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | RSVHTTETSNAVVCLDLAASCRKCLLDRAYLIKLSGLNKKMYQSCFKSFEC-LLGLNSNIGIRDLAVQFT |
RSVHT.E.SNAVVCLDLAASCRKCLLDRAYL.KL.GLNKK.YQSCFKSFE..L..L.SNIGIR.LAVQF. | |
Retrocopy | RSVHTPENSNAVVCLDLAASCRKCLLDRAYLFKLLGLNKKTYQSCFKSFEF>LMDLHSNIGIRQLAVQFS |
Parental | CTEAVNMASKMLQS-YESSLPQTQQVDLDLSRPLFTTAALLSACKILKLKVDKKKMVATSGVKKAIFDRL |
CTEAVNM.SK.LQS.YE.SL.QT...D..L.RPLFTT..L.S.CKILKLK.DK.KM.AT..VKKA.FD.L | |
Retrocopy | CTEAVNMISKILQS<YEFSLSQTPRRDFGLARPLFTTTTLFSSCKILKLKADKNKMAATASVKKATFDQL |
Parental | CKQLEKIGQQVDREPGDLAPPP |
CKQ.EKIG.QVDRE..DLA.PP | |
Retrocopy | CKQFEKIGLQVDRELEDLAIPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002944 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010859 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000012122 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000688 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000004207 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000000278 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005205 | 2 retrocopies |
retro_tsyr_1294, retro_tsyr_889 ,
|
Tursiops truncatus | ENSTTRG00000013294 | 1 retrocopy |