RetrogeneDB ID:

retro_tbel_567

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_2440:2134..2467(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NAA20
Ensembl ID:ENSTBEG00000000969
Aliases:None
Description:N(alpha)-acetyltransferase 20, NatB catalytic subunit [Source:HGNC Symbol;Acc:15908]


Retrocopy-Parental alignment summary:






>retro_tbel_567
GAATGGCACAGCACATCACAGCACTGTCTATCGCCCCAGAATTTCGACAACTTGGTTTGGCTGCTAAACTTTATGGAATT
ATTAGAGGAGATTTCAGAAAGAAAGGGTGGACTTTTTGTTGATCTCTTCGTAAGAGTGTCCAACCAGGTTACAGTCAACA
TGTACAAACAGCTGGGCTACCGTGTGTACAGGACGGTCATAGAGTACTATTCAGCCATCAACGGGGAGTCCCATGAGGAC
GCTTACGACCTTATGAGGAAAGCACTTTCCAGGGACACCGAGAAGAAATCCATCATACCATTACCTCATGGGGTGAAGCC
TGAAGACATTGAA

ORF - retro_tbel_567 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.73 %
Parental protein coverage: 68.75 %
Number of stop codons detected: 0
Number of frameshifts detected: 2


Retrocopy - Parental Gene Alignment:

ParentalEWHG-HVTALSVAPEFRRLGLAAKL-MELLEEISERKGGFFVDLFVRVSNQVAVNMYKQLGYSVYRTVIE
EWH..H.TALS.APEFR.LGLAAKL.MELLEEISERKGG.FVDLFVRVSNQV.VNMYKQLGY.VYRTVIE
RetrocopyEWHS<HITALSIAPEFRQLGLAAKL>MELLEEISERKGGLFVDLFVRVSNQVTVNMYKQLGYRVYRTVIE
ParentalYYSASNGEPDEDAYD-MRKALSRDTEKKSIIPLPHPVRPEDIE
YYSA.NGE..EDAYD.MRKALSRDTEKKSIIPLPH.V.PEDIE
RetrocopyYYSAINGESHEDAYDLMRKALSRDTEKKSIIPLPHGVKPEDIE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tupaia belangeri was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_tbel_567 retrocopy.

TSS - click to see more details

Tupaia belangeri was not studied using FANTOM5 data.

Lab - click to see more details

retro_tbel_567 was not experimentally validated.

Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 15 parental genes, and 21 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000011441 retrocopy
retro_btau_899,
Canis familiaris ENSCAFG000000320251 retrocopy
retro_cfam_768,
Callithrix jacchus ENSCJAG000000053774 retrocopies
retro_cjac_1099, retro_cjac_1629, retro_cjac_2984, retro_cjac_439,
Gorilla gorilla ENSGGOG000000042471 retrocopy
retro_ggor_374,
Microcebus murinus ENSMICG000000060441 retrocopy
retro_mmur_540,
Macaca mulatta ENSMMUG000000077081 retrocopy
retro_mmul_479,
Mustela putorius furoENSMPUG000000012282 retrocopies
retro_mputfur_1495, retro_mputfur_321,
Mus musculus ENSMUSG000000027283 retrocopies
retro_mmus_1228, retro_mmus_3146, retro_mmus_3257,
Nomascus leucogenys ENSNLEG000000098551 retrocopy
retro_nleu_2267,
Oryctolagus cuniculus ENSOCUG000000154811 retrocopy
retro_ocun_1331,
Otolemur garnettii ENSOGAG000000115421 retrocopy
retro_ogar_2007,
Pongo abelii ENSPPYG000000107461 retrocopy
retro_pabe_342,
Pan troglodytes ENSPTRG000000132991 retrocopy
retro_ptro_284,
Ictidomys tridecemlineatus ENSSTOG000000147331 retrocopy
retro_itri_1656,
Tupaia belangeri ENSTBEG00000000969 1 retrocopy
retro_tbel_567 ,


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