RetrogeneDB ID: | retro_tbel_572 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_2448:658115..658409(+) | ||
Located in intron of: | ENSTBEG00000010873 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNIH | ||
Ensembl ID: | ENSTBEG00000010265 | ||
Aliases: | None | ||
Description: | cornichon homolog (Drosophila) [Source:HGNC Symbol;Acc:19431] |
Percent Identity: | 74.49 % |
Parental protein coverage: | 67.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVFTFGAFCYM-LLLLXXXXXXXXXXXIIAFDELKTDYKNPIDQCNTLNPLVLPEYLIHAFFCVMFLCAA |
M.F...AFCYM..LLL...........IIAFDELKTDYKNPIDQCNTL.PLVLPEYLIHAFFCV.FLCA. | |
Retrocopy | MAFMSAAFCYMPALLLTATLIFIAIWHIIAFDELKTDYKNPIDQCNTLSPLVLPEYLIHAFFCVLFLCAR |
Parental | EWLTLGLNM--LVAH-WRYMSRPVMSGP |
EWL.LGLNM..LV.H.WRYMSRPVMSGP | |
Retrocopy | EWLSLGLNMPLLVYHIWRYMSRPVMSGP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000031178 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000007306 | 1 retrocopy | |
Equus caballus | ENSECAG00000026814 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000014841 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012704 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024582 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000005287 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000010265 | 3 retrocopies |
retro_tbel_2080, retro_tbel_3728, retro_tbel_572 ,
|
Tarsius syrichta | ENSTSYG00000011295 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008259 | 1 retrocopy |