RetrogeneDB ID: | retro_tbel_848 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3150:493310..493949(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPA1 | ||
Ensembl ID: | ENSTBEG00000008947 | ||
Aliases: | None | ||
Description: | pyrophosphatase (inorganic) 1 [Source:HGNC Symbol;Acc:9226] |
Percent Identity: | 97.65 % |
Parental protein coverage: | 73.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSGFSCEERAAPFSLEYRVFLINEKGQYISPFHDIPIYSDKDVFHMVAGVPRWSNAKMEIATKDPLNPIK |
MSGFSCEERAAPFSLEYRVFL.NEKGQYISPFHDIPIYSDKDVFHMV..VPRWSNAKMEIATKDPLNPIK | |
Retrocopy | MSGFSCEERAAPFSLEYRVFLKNEKGQYISPFHDIPIYSDKDVFHMVVEVPRWSNAKMEIATKDPLNPIK |
Parental | QDVKKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARGEIIGVKV |
QDVKKGK.RYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARGEIIGVKV | |
Retrocopy | QDVKKGKPRYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARGEIIGVKV |
Parental | LGILAMIDEGETDWKVIAINVDDPDAANYNDINDVKRLKPGYLEATVDWFRRYKVPDGKPENEFAFNAEF |
LGILAMIDEGETDWKVIAINV.DPDAANYNDINDVKRLKPGYLEATVDWFRRYKVPDGKPENEFAFNAEF | |
Retrocopy | LGILAMIDEGETDWKVIAINVEDPDAANYNDINDVKRLKPGYLEATVDWFRRYKVPDGKPENEFAFNAEF |
Parental | KDK |
KDK | |
Retrocopy | KDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000014023 | 1 retrocopy | |
Homo sapiens | ENSG00000180817 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000004048 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017790 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006397 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016098 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016001 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000006788 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029405 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002585 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000008947 | 3 retrocopies |
retro_tbel_3560, retro_tbel_3561, retro_tbel_848 ,
|
Tarsius syrichta | ENSTSYG00000005511 | 1 retrocopy |