RetrogeneDB ID: retro_tbel_918

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: GeneScaffold_3310:27667..28084(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANP32E
• Ensembl ID: ENSTBEG00000001989
• Aliases: None
• Description: acidic (leucine-rich) nuclear phosphoprotein 32 family, member E [Source:HGNC Symbol;Acc:16673]

Sequence

>retro_tbel_918
GTGACAGAGTTAGTCCTTGATAATTGCCTGTGTGTCAGTGGGGAAACTGAAGGCCTGAATGATGCTTTTAAAGAACTAGA
GTTTCTGAGTACGGCTAATGGGGAGCTAAGTTCACTGGCCAGGCTTCCCAGCTTAAATAAACTTTGGAAGTTGGAACTTA
GTGGCAATATAATTTCTGGAGGCTTGGAAGTCCTAGCAGAGAAATGTCTGAATCTTACCTACTTCAATCTAAGTGGAAAC
AAAATCAAAGATCTCAGTACCATAGAAGCTCTGCAAAATCTTAAAAATTTGAAAAGTCTGGACTTGTTTAATTGTGAGAT
CACAAACCTGGAAGATTATAGAGAAAATATTTTTGAACTGCTGCAGCAAATCACCTACTTAGATAGATTTGATCAGGAAG
ATAACGAAGCACCAGAC

Alignment

ORF - retro_tbel_918 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.37 %
• Parental protein coverage: 56.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VTELVLDNCLCVNGEIEGLNDTFKELEFLSMANVELSSLARLPSLNKLRKLELSDNIISGGLEVLAEKCP
          VTELVLDNCLCV.GE.EGLND.FKELEFLS.AN.ELSSLARLPSLNKL.KLELS.NIISGGLEVLAEKC.
Retrocopy VTELVLDNCLCVSGETEGLNDAFKELEFLSTANGELSSLARLPSLNKLWKLELSGNIISGGLEVLAEKCL

Parental  NLTYLNLSGNKIKDLSTVEALQNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQEDNEAPD
          NLTY.NLSGNKIKDLST.EALQNLKNLKSLDLFNCEITNLEDYRE.IFELLQQITYLD.FDQEDNEAPD
Retrocopy NLTYFNLSGNKIKDLSTIEALQNLKNLKSLDLFNCEITNLEDYRENIFELLQQITYLDRFDQEDNEAPD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_918 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_918 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 25 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000009710	1 retrocopy	retro_cjac_2926,
Dipodomys ordii	ENSDORG00000011690	4 retrocopies	retro_dord_311, retro_dord_358, retro_dord_495, retro_dord_777,
Loxodonta africana	ENSLAFG00000026778	1 retrocopy	retro_lafr_580,
Microcebus murinus	ENSMICG00000015265	1 retrocopy	retro_mmur_115,
Monodelphis domestica	ENSMODG00000027412	2 retrocopies	retro_mdom_1802, retro_mdom_569,
Ictidomys tridecemlineatus	ENSSTOG00000004170	5 retrocopies	retro_itri_1003, retro_itri_1031, retro_itri_1359, retro_itri_394, retro_itri_955,
Tupaia belangeri	ENSTBEG00000001989	1 retrocopy	retro_tbel_918 ,
Tupaia belangeri	ENSTBEG00000002189	8 retrocopies	retro_tbel_1659, retro_tbel_2710, retro_tbel_2772, retro_tbel_3770, retro_tbel_3863, retro_tbel_4351, retro_tbel_4361, retro_tbel_491,
Tupaia belangeri	ENSTBEG00000016417	2 retrocopies	retro_tbel_4078, retro_tbel_4595,