>retro_tgut_16
ATGGCGGTGCTGCTGGAGACCACAATGGGCGACCTGGTCATCGACCTGTACACAGAGGAGCGGCCCCGCGCTTGTCTGAA
TTTCCTGAAGCTCTGCAAAGTCAAGTACTACAACTATTGTCTTATTTATAATGTACAGCGGGATTTTATTATACAAACTG
GCGACCCCATGGGAACTGGCCATGGAGGGGAATCCATATTTTTTCAACTGTATGGTGAGCAAGCCAGATTTTTTGAGGCA
GAAAAGGTGCCCAGAATCAAACACAAGAAGAAAGGAACTGTGTCAATGGTGAACAATGGCAGTGATCAGCATGGATCACA
GTTCCTCATTACCACAGGGGAAAACCTGGATTACCTTGATAGTGTACATACAGTATTTGGGGAAGTGACAGAAGGCATGG
ATGTATTGATGAAAATCAATGAAACCTTTGTAGGTAAGGATTTTATCCCATATCAAGATATCAGGATAAATCATACAGTA
ATTTTAGATGATCCCTTTGATGATCCACCTGGCTTGTGTGTTCCTGATCGCTCACCAGAACCTACAAAGGAACAGCTTGA
CAGTGGGAGAATAGGAGCAGATGAAGAAATTGATGACATGAGAGGACGGTCTGCAGATGAAATAGAAGAAGTTCAGGCCG
AAAAAGAAGCAAAAAGTCATGCTATTCTTCTGGAAATGGTGGGAGACTTACCAGATGCAGACATCAAGCCACCAGAAAAT
GTGCTGTTTATCTGTAAGTTGAATCCTGTGACCACAGGTGAAGACCTGGAGATAATATTTTCACGATTTGGTCCCATTAA
AAGTTGCGAAGTGATCCGAGACTGGAAGACTGGTGAATCTCTTTGTTATGCTTTCATTGAGTTTGAAAAGGAGGAAGACT
GTGAGAAAGCCTACTTCAAAATGGACAATGTGCTGATAGATGACAGACGGATACATGTGGATTTTAGCCAGTCTGTTGCA
AAGATTAAATGGAAGGGAAAAGGTGGACAGTATACCAAGGAAGATTCCAAGCACTATGAGAAGGAAGGTGACAAACCTTC
GAAATTTGCTCTGAAAGAAAAAGTAAAACCAAAGCAAGATGGCAAGTATGACCTTGTGCTGGATGAGGATGTAGAGAAGT
CTCACACAAGTCAGTCACACTTGGCTAAAAGAAAGAAGAAGAAAAAGCACCACCACCGTGATGAAGATGACAAGAGGACC
AAAAAATCTAAGGATTCTGACCGAAAGCATGAAGAATGCTGTAGGAAGAGGACCAGGGATATGAAGAAAGACAGGCATCG
AAGCCGTAGCCATTCTCAGGAGAGAGATTACACT
ORF - retro_tgut_16 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.27 % |
Parental protein coverage: |
91.86 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MAVLLETTVGDLVIDLYTEERPRACLNFLKLCKVKYYNYCLIYNVQRDFIIQTGDPMGTGRGGESIFCQL |
| MAVLLETT.GDLVIDLYTEERPRACLNFLKLCKVKYYNYCLIYNVQRDFIIQTGDPMGTG.GGESIF.QL |
Retrocopy | MAVLLETTMGDLVIDLYTEERPRACLNFLKLCKVKYYNYCLIYNVQRDFIIQTGDPMGTGHGGESIFFQL |
|
Parental | YGDQARFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDVLKTIN |
| YG.QARFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLD.VHTVFGEVTEGMDVL..IN |
Retrocopy | YGEQARFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDSVHTVFGEVTEGMDVLMKIN |
|
Parental | ETFVDKDFIPYQDIRINHTVILDDPFDDPPGLCVPDRSPEPTKEQLDSGRIGADEEIDDMKGRSAEEIEE |
| ETFV.KDFIPYQDIRINHTVILDDPFDDPPGLCVPDRSPEPTKEQLDSGRIGADEEIDDM.GRSA.EIEE |
Retrocopy | ETFVGKDFIPYQDIRINHTVILDDPFDDPPGLCVPDRSPEPTKEQLDSGRIGADEEIDDMRGRSADEIEE |
|
Parental | VQAEKEAKTRAILLEMVGDLPDADIKPPENVLFVCKLNPVTTGEDLEIIFSRFGPIKSCEVIRDWKTGES |
| VQAEKEAK..AILLEMVGDLPDADIKPPENVLF.CKLNPVTTGEDLEIIFSRFGPIKSCEVIRDWKTGES |
Retrocopy | VQAEKEAKSHAILLEMVGDLPDADIKPPENVLFICKLNPVTTGEDLEIIFSRFGPIKSCEVIRDWKTGES |
|
Parental | LCYAFIEFEKEEDCEKAYFKMDNVLIDDRRIHVDFSQSVAKIKWKGKGGRYTKEDFKDYEKERDKPSKFA |
| LCYAFIEFEKEEDCEKAYFKMDNVLIDDRRIHVDFSQSVAKIKWKGKGG.YTKED.K.YEKE.DKPSKFA |
Retrocopy | LCYAFIEFEKEEDCEKAYFKMDNVLIDDRRIHVDFSQSVAKIKWKGKGGQYTKEDSKHYEKEGDKPSKFA |
|
Parental | LKEKAKPKQDAKYDLVLDEDVEESHTSQSHLAKKQKKKKHHHSEDEDDDKRTKKSKDSDRKHEERCRERS |
| LKEK.KPKQD.KYDLVLDEDVE.SHTSQSHLAK..KKKKHHH.....DDKRTKKSKDSDRKHEE.CR.R. |
Retrocopy | LKEKVKPKQDGKYDLVLDEDVEKSHTSQSHLAKRKKKKKHHHR--DEDDKRTKKSKDSDRKHEECCRKRT |
|
Parental | KSEKKDRHRSRSRSQERDYT |
| ...KKDRHRSRS.SQERDYT |
Retrocopy | RDMKKDRHRSRSHSQERDYT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Taeniopygia guttata was not studied using RNA-Seq expression data.
Taeniopygia guttata was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tgut_16 retrocopy.
Taeniopygia guttata was not studied using FANTOM5 data.
retro_tgut_16 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_tgut_16 has 0 orthologous retrocopies within neognath group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.