>retro_mmul_1715
GCCTGCTTTAATTTCTTGAGATTGTACAAAATAAAATATTACAATTATTGCCTTATTCACAGTGTACAAAGGGATTTTAT
CATACAAACTGTTGATCCTATAGGGACTGGTCATGGAGGAGAGTCTATTTTTGGCCAATTGTATGGTGATCAAGCGAGCT
TTTTTGAGACAGAAAACGTCCCAAGAGTTAAACACAAGAAGAAAGGCACAATGTCCTTGGTGAATAATGGCAGTGATCAA
CAGGGATCTCAGTTTCTTATCACTACAGGAGAAAATCTAGATTACCTTGATGGTACCATACAGTATTTGGTGAGGTGACA
GAAGGCATTGACATAATTAAGAAAATTAATGAGACCTTTGTTGACAAGGACTTTGTACCATATCAGGATATCAGGATAAA
TTATACAGTGATTTTAGATGATCCGTTTTGATGGCACTCCTCATTTATTAATCCCTGATCTATCACCAGAACCTACAAGT
GAACAATTAAAGAGTGGGTAGAATTGATGCAGATGAAGAAATTGATCATTTCAAAGGAAGGTCAGCTGAAGAAGTAGAAG
AACTAAAGGCAGAAAAAGAAGCTAAAACTCAGGCTTTACTTTTAGAATGGTAGGAGACCTACCTGATGCAGATATTAAAC
CTCCAGAAAAATCTGCTGTGTTTGTAAATTGAATCCAGTGACTACAGATGAGGATCTGGATATAATACTCTCTAGATTTG
GGCCAATAAGAAGTTGTGAAGTTATCTGGGACTGGAAGACAGGAGAAACCCTCTGTTAT
ORF - retro_mmul_1715 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.28 % |
Parental protein coverage: |
52.85 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | ACLNFLKLCKIKYYNYCLIHNVQRDFIIQTGDPTGTGRGGESIFGQLYGDQASFFEAEKVPRIKHKKKGT |
| AC.NFL.L.KIKYYNYCLIH.VQRDFIIQT.DP.GTG.GGESIFGQLYGDQASFFE.E.VPR.KHKKKGT |
Retrocopy | ACFNFLRLYKIKYYNYCLIHSVQRDFIIQTVDPIGTGHGGESIFGQLYGDQASFFETENVPRVKHKKKGT |
|
Parental | VSMVNNGSDQHGSQFLITTGENLDYLDGV-HTVFGEVTEGMDIIKKINETFVDKDFVPYQDIRINHTVIL |
| .S.VNNGSDQ.GSQFLITTGENLDYLDG..HTVFGEVTEG.DIIKKINETFVDKDFVPYQDIRIN.TVIL |
Retrocopy | MSLVNNGSDQQGSQFLITTGENLDYLDGT<HTVFGEVTEGIDIIKKINETFVDKDFVPYQDIRINYTVIL |
|
Parental | DDP-FDDPPDLLIPDRSPEPTREQLDS-GRIGADEEIDDFKGRSAEEVEEIKAEKEAKTQAILLE-MVGD |
| DDP.FD..P.LLIPD.SPEPT.EQL.S.GRI.ADEEID.FKGRSAEEVEE.KAEKEAKTQA.LLE.MVGD |
Retrocopy | DDP>FDGTPHLLIPDLSPEPTSEQLKS>GRIDADEEIDHFKGRSAEEVEELKAEKEAKTQALLLE<MVGD |
|
Parental | LPDADIKPPE-NVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCY |
| LPDADIKPPE.....VCKLNPVTTDEDL.II.SRFGPIRSCEVI.DWKTGE.LCY |
Retrocopy | LPDADIKPPE<KICCVCKLNPVTTDEDLDIILSRFGPIRSCEVIWDWKTGETLCY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .11 RPM |
7 .51 RPM |
SRP007412_brain_prefrontal_cortex |
0 .08 RPM |
2 .78 RPM |
SRP007412_cerebellum |
0 .45 RPM |
7 .68 RPM |
SRP007412_heart |
0 .00 RPM |
5 .83 RPM |
SRP007412_kidney |
0 .12 RPM |
6 .46 RPM |
SRP007412_liver |
0 .00 RPM |
1 .58 RPM |
SRP007412_testis |
0 .04 RPM |
7 .73 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1715 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1715 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1715 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
7 retrocopies.