RetrogeneDB ID: | retro_trub_18 | ||
Retrocopylocation | Organism: | Fugu rubripes (Takifugu rubripes) | |
Coordinates: | scaffold_527:78265..79327(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTRUG00000004527 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRU.1921 | ||
Ensembl ID: | ENSTRUG00000010617 | ||
Aliases: | None | ||
Description: | rod-like opsin [Source:RefSeq peptide;Acc:NP_001029021] |
Percent Identity: | 74.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWKYSLVAAYMLFLIITAFPVNFLTLFVTVKHKKLRT |
MNGTEGP.FY.PM.N.TGVVRSP..YPQYYL..P..Y....AYM..LI...FP.NFLTL.VT..HKKLRT | |
Retrocopy | MNGTEGPFFYVPMVNTTGVVRSPYDYPQYYLVNPAAYAALGAYMFLLILLGFPINFLTLYVTIEHKKLRT |
Parental | PLNYVLLNLAVADLFMVIGGFTVTLYTALHAYFVLGVTGCNIEGFFATLGGEIALWSLVVLAVERYIVVC |
PLNY.LLNLAVADLFMV.GGFT.T.YT..H.YFVLG..GCN.EGFFATLGGEI.LWSLVVLA.ER..VVC | |
Retrocopy | PLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVLGRLGCNLEGFFATLGGEIGLWSLVVLAIERWVVVC |
Parental | KPMTNFRFGEKHAIAGLVFTWIMALTCATPPLLGWSRYIPEGMQCSCGIDYYTPKPEINNTSFVIYMFIL |
KP..NFRFGE.HAI.GL.FTWIMA..CA.PPL.GWSRYIPEGMQCSCG.DYYT.....NN.SFVIYMF.. | |
Retrocopy | KPISNFRFGENHAIMGLAFTWIMASACAVPPLVGWSRYIPEGMQCSCGVDYYTRAEGFNNESFVIYMFVC |
Parental | HFSIPLAIIFFCYSRLLCTVRAAAALQQESETTQRAEKEVTRMVIVMVISFLVCWVPYASVAWYIFANQG |
HF.IPL.IIFFCY.RLLC.V..AAA.QQESETTQRAE.EVTRMVI.MVISFLVCW.PYA.VAWYIF..QG | |
Retrocopy | HFLIPLIIIFFCYGRLLCAVKEAAAAQQESETTQRAEREVTRMVILMVISFLVCWLPYAGVAWYIFTHQG |
Parental | TEFGPVFMTAPAFFAKSAALYNPVIYILLNRQFRNCMITTVCCGKNPFGDDDAATTVSKTQSSSVSSSQV |
.EFGPVFMT.PAFFAKS...YNP.IYI..N.QFR.CMITT.CCGKNPF.....A.T.SKT..SSVSSS.V | |
Retrocopy | SEFGPVFMTIPAFFAKSSSIYNPMIYICMNKQFRHCMITTLCCGKNPFEEEEGASTTSKTEASSVSSSSV |
Parental | APA |
.PA | |
Retrocopy | SPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Gadus morhua | ENSGMOG00000013755 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000017219 | 1 retrocopy | |
Oryzias latipes | ENSORLG00000010979 | 1 retrocopy | |
Tetraodon nigroviridis | ENSTNIG00000017925 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000010617 | 1 retrocopy |
retro_trub_18 ,
|
Takifugu rubripes | ENSTRUG00000011365 | 1 retrocopy | |
Xiphophorus maculatus | ENSXMAG00000017297 | 1 retrocopy |