>retro_trub_44
TTCCCCACCGTGGACGTCCCTGACCATGCTCACTACATCATTGGCTCGGTCATCTTGCTCGTGGGCCTGACGGGCATGTC
GGGAAACGCTCTCGTCATCTACGTCTTCTGCCGCAGCCGCACCCTGCGGTCGCCTAGCAACCTGCTGGTGGTGAACCTGG
CAGCCGCCGACTTCCTGATGTCGCTGACGCAGTCCCCGGTGTTCTTCGTGGCCAGCCTGCACCGCCGCTGGTTGTTTGGA
GAGCTGGCCTGTGAACTGTACGCCTTCTGCGGCGCGCTCTTTGGCATCGCCTCTATGATGACCCTCACCGCCATCGCCGT
GGACCGCTGCCTGGCCATCACGCGGCCGCTGGCCCGGCTGGGCGGCATGAGTCCCGGGGGGGTGCTGGCGGTGCTGGCGG
GCGTGTGGCTGTACTCGCTGTGCTGGAGTCTGCCGCCGTTCTTTGGGTGGAGTGCTTATGTCCCTGAGGGCCTCCAGACG
TCCTGCAGCTGGGACTACATGAGCTTCACCGCTGCCGTGCGCTCCTACACCATCCTGCTCTTTGCTTTTGTCTTCTTTGT
CCCGCTCGGTCTCATCGCCGGCTGCTACTTCGCCATCTTCCGGGCGGTGCGGCGTGCGGGTCAGGAGGTGGAGCGGCTGA
ACTGTGGACAGATGAACAAGGCGTATGAGCGTCTGCGCAGCGAGTGGCACTTAGCTAAGGTGGCTCTGGGAGTCATCCTG
CTCTTCGTCGTGTCCTGGGCGCCATACTCCGCCGTGGCCCTGACCGCCACTGCGGGCTACGCCCACCTGCTGACCCCCTA
CATGAACTCCGTTCCTGCCGTCATTGCCAAGGCTTCAGCCATCCACAACCCCATCATCTACGCCATCACACACCCCAAGT
ATCGGGCTGCCATTGGCCGATGTGTCCCACTGCTGCGTCCTCTGCTGCGTCTCCAGGACAAGGACCTTCGCTCGTCCATC
AGCTCTAGCAGCGCTTTG
ORF - retro_trub_44 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
62.42 % |
Parental protein coverage: |
75.86 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | FPTVDVPDHAHYTIGSVILVIGITGMIGNFLVIYAFCRSRSLRTPANMFIINLAVTDLLMCVTQTPIFFT |
| FPTVDVPDHAHY.IGSVIL..G.TGM.GN.LVIY.FCRSR.LR.P.N....NLA..D.LM..TQ.P.FF. |
Retrocopy | FPTVDVPDHAHYIIGSVILLVGLTGMSGNALVIYVFCRSRTLRSPSNLLVVNLAAADFLMSLTQSPVFFV |
|
Parental | TSMYKRWIFGEKGCELYAFCGALFGICSMITLTVIAIDRYFVITRPLTSIGVLSRKRAFVILMTVWIYSL |
| .S...RW.FGE..CELYAFCGALFGI.SM.TLT.IA.DR...ITRPL...G..S..........VW.YSL |
Retrocopy | ASLHRRWLFGELACELYAFCGALFGIASMMTLTAIAVDRCLAITRPLARLGGMSPGXXXXXXXXVWLYSL |
|
Parental | GWSLPPFFGWSAYVPEGLLTSCTWDYMTFSPSVRAYTMLLFIFVFFLPLFIIIYCYFFIFRAIRATNKSV |
| .WSLPPFFGWSAYVPEGL.TSC.WDYM.F...VR.YT.LLF.FVFF.PL..I..CYF.IFRA.R.....V |
Retrocopy | CWSLPPFFGWSAYVPEGLQTSCSWDYMSFTAAVRSYTILLFAFVFFVPLGLIAGCYFAIFRAVRRAGQEV |
|
Parental | GMCMCPHIRRESVKNFQRLQNEWKMAKIALMVILLYVISWSPYSCVALTAFAGYADMLTPYMNSVPAVIA |
| ....C............RL..EW..AK.AL.VILL.V.SW.PYS.VALTA.AGYA..LTPYMNSVPAVIA |
Retrocopy | ERLNCGQMNKA----YERLRSEWHLAKVALGVILLFVVSWAPYSAVALTATAGYAHLLTPYMNSVPAVIA |
|
Parental | KASAIHNPIIYAITHPKYRLALAKYIPCLGFLLCISPHELQSTSSSFMSL |
| KASAIHNPIIYAITHPKYR.A.....P.L..LL......L.S..SS...L |
Retrocopy | KASAIHNPIIYAITHPKYRAAIGRCVPLLRPLLRLQDKDLRSSISSSSAL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Takifugu rubripes was not studied using RNA-Seq expression data.
Takifugu rubripes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_trub_44 retrocopy.
Takifugu rubripes was not studied using FANTOM5 data.
retro_trub_44 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_trub_44 has 0 orthologous retrocopies within teleost group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.