RetrogeneDB ID: | retro_tsyr_1342 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_4053:7745..8184(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAP18 | ||
Ensembl ID: | ENSTSYG00000005454 | ||
Aliases: | None | ||
Description: | Sin3A-associated protein, 18kDa [Source:HGNC Symbol;Acc:10530] |
Percent Identity: | 78.15 % |
Parental protein coverage: | 96.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | VTQEEIKKEPEKPIDR-EKTCPLLLRVFTTN-NGRHHRM-DEFSRGNVPSSELQIYTWMDATLKELTSLV |
V.QEEIKKE..KPI....KTCPLLLRV.TT..NG.HH.M.DEFSR.NVPSSELQI..W.DATLKEL.SLV | |
Retrocopy | VIQEEIKKESKKPIHP<KKTCPLLLRVLTTP<NGCHHHM<DEFSRRNVPSSELQICIWIDATLKELPSLV |
Parental | KEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPN-R |
KE.YPEARKKGTHFNFAIVFT.VKRPGYRVKEIGSTMSGRKGTD.SMT.QSQKFQI..YLD...TPPN.. | |
Retrocopy | KEIYPEARKKGTHFNFAIVFTNVKRPGYRVKEIGSTMSGRKGTDGSMTPQSQKFQIPNYLDMVFTPPN>Q |
Parental | APPTSGRMRPY |
.PP..G.MRPY | |
Retrocopy | VPPHLGHMRPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000006309 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000607 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021963 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000016315 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000010732 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005454 | 22 retrocopies |
retro_tsyr_1018, retro_tsyr_1117, retro_tsyr_1225, retro_tsyr_1342 , retro_tsyr_1439, retro_tsyr_1490, retro_tsyr_1578, retro_tsyr_1708, retro_tsyr_1767, retro_tsyr_1851, retro_tsyr_1938, retro_tsyr_2118, retro_tsyr_2179, retro_tsyr_398, retro_tsyr_451, retro_tsyr_563, retro_tsyr_826, retro_tsyr_837, retro_tsyr_886, retro_tsyr_892, retro_tsyr_901, retro_tsyr_967,
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