>retro_tsyr_1557
CTGATAGCTTACCATCTACCCTCTGCAGTGTTTGCCTGGTCATGCTGGAAAACTGTCTTTACATTACCAACGAATCCTTC
AAGAGAATTCCATCTCTCTCGTGCAGAGAAAGAATTGCTGGAGAGAGAGCCGAGAGGTGAAGCCATCAGGAAGTTCTTAG
GCGAGCGAGCAGCCAAAGGTCTTCCCGTCTACACCAGGACCGTGTCTGGAGCAATCCGATATTGTGACAGATGCCAACTT
AAAAGCCAGATCGCTGCCATCACTGTTCTGTCTGTGATAGATGTATATCGAAGATGGCTCATCATTGCCCGCGGATGAAC
GATTGTGTTGGATTTTCGAATTATAAATTCTTTCTCCTTTTCTTGGCTTATCCTCTGCTCTACTGCCTTTTTATTGCAGT
TACAGATTTACAGTATTTTGTCAAATTTTGGACAAATGGCCTACCTGATACTCACGCCAAGTTCCATATTATGTTTTCAT
TCCTTGCTGCAGCTATGTTTTCTGTCAGCTTGACTTCTCTGTTTGGCTATCATTGTTGGCTAGTCAGCAAAAATAAATCT
GCTTTAGAGGCATTCAGAAGTCCAGCATTTCAACATGGAACAGATAAGAACGGATCAGGCTTGGGCTTCAGTAAAAAGAT
GAGACAAGTATTTGGTGATGAGGAGAAGTACTGGTTGCTACCCATTTTTTCAAGTTTAGATGATAGCTGCTCCTTTCCAA
CTTGCCTTGTTAACCAGGATCCCGAGCAACTG
ORF - retro_tsyr_1557 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
56.35 % |
Parental protein coverage: |
88.65 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | LILYHAIFVFFAWTYWKSIFTLPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKK-LPVYTRTGSG |
| LI.YH.....FAW..WK..FTLP..P...FHLS...KE..E.E.R.E.....L...A.K.LPVYTRT.SG |
Retrocopy | LIAYHLPSAVFAWSCWKTVFTLPTNPSREFHLSRAEKELLEREPRGEAIRKFLGERAAKGLPVYTRTVSG |
|
Parental | AVRFCDRCHLI-KPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFFLQFLAYSVLYCLYIATTVFSY |
| A.R.CDRC.L..KPDRCHHCSVC..C..KM.HHCP..N.C.GFSNYKFFL.FLAY..LYCL.IA.T...Y |
Retrocopy | AIRYCDRCQLK<KPDRCHHCSVCDRCISKMAHHCPRMNDCVGFSNYKFFLLFLAYPLLYCLFIAVTDLQY |
|
Parental | FIKYWRGELPNVRSKFHVLFLLFVACMFFVSLVILFGYHCWLVGRNKTTLEAFCTPVFTSGPEKNGFNLG |
| F.K.W...LP....KFH..F....A.MF.VSL..LFGYHCWLV..NK..LEAF..P.F..G..KNG..LG |
Retrocopy | FVKFWTNGLPDTHAKFHIMFSFLAAAMFSVSLTSLFGYHCWLVSKNKSALEAFRSPAFQHGTDKNGSGLG |
|
Parental | FIKNIQQVFGDNKKLWLIPIGSSPGDGHSFPMRSMNESQNPL |
| F.K...QVFGD..K.WL.PI.SS..D..SFP....N.....L |
Retrocopy | FSKKMRQVFGDEEKYWLLPIFSSLDDSCSFPTCLVNQDPEQL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1557 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.