RetrogeneDB ID: | retro_tsyr_998 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_270549:2841..3372(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZDHHC20 | ||
Ensembl ID: | ENSTSYG00000003013 | ||
Aliases: | None | ||
Description: | zinc finger, DHHC-type containing 20 [Source:HGNC Symbol;Acc:20749] |
Percent Identity: | 52.54 % |
Parental protein coverage: | 54.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YCLFVAVTVLEXXXXXXXNELTDTRAKFHILFLFFVSAMFFISVLSLFSYHCWLVGKNRTTIESFRAPTF |
YCLF.AVT.L........N.L.DT.AKFHI.F.F...AMF..S..SLF.YHCWLV.KN....E.FR.P.F | |
Retrocopy | YCLFIAVTDLQYFVKFWTNGLPDTHAKFHIMFSFLAAAMFSVSLTSLFGYHCWLVSKNKSALEAFRSPAF |
Parental | SYGPDGNGFSLGCSKNWRQVFGDEKKYWLLPVFSSLGDGCSFPTRLVGMDPEQASATSQNEFARSISSNQ |
..G.D.NG..LG.SK..RQVFGDE.KYWLLP.FSSL.D.CSFPT.LV..DPEQ.S.......A.....N. | |
Retrocopy | QHGTDKNGSGLGFSKKMRQVFGDEEKYWLLPIFSSLDDSCSFPTCLVNQDPEQLSTPAVLNSATKSPENH |
Parental | PFPIKPLSESKNRLLDSDSQWLDNGAEEGIVRSGTNN |
.FP.KPL.ES...LL.....W..N....G....G..N | |
Retrocopy | QFPAKPLRESQSHLLTDSQSWSENCTNSGKGKAGMSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012155 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000011489 | 1 retrocopy | |
Equus caballus | ENSECAG00000016465 | 1 retrocopy | |
Homo sapiens | ENSG00000180776 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000435 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000007373 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005201 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005695 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000003013 | 1 retrocopy |
retro_tsyr_998 ,
|
Tarsius syrichta | ENSTSYG00000006767 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012575 | 1 retrocopy |