RetrogeneDB ID: | retro_tsyr_1606 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_508943:545..815(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF4 | ||
Ensembl ID: | ENSTSYG00000011244 | ||
Aliases: | None | ||
Description: | ring finger protein 4 [Source:HGNC Symbol;Acc:10067] |
Percent Identity: | 67.71 % |
Parental protein coverage: | 64.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | DEELSRDRDVYVTTHTPRNARDEGATGLRPLGTVSCPIC-MDGYSEIVQNGRLIVSTECGH-VFCSQCLR |
DEE..RDRD.YVTTH.PRN.RD...TGL.....VSCPI..MD.YSEIVQN.RLIVS.ECG...FCSQCL. | |
Retrocopy | DEEWCRDRDEYVTTHIPRNTRDKESTGLT---QVSCPIT<MDRYSEIVQNRRLIVSAECGQ>IFCSQCLW |
Parental | DSLKNANTCPTCRKKINHKRYHPIYI |
DSL..A.TC.T.RKKIN.K.Y.PI.I | |
Retrocopy | DSL*YAYTC-TGRKKINLKWYYPICI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014366 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014856 | 1 retrocopy | |
Equus caballus | ENSECAG00000024877 | 1 retrocopy | |
Homo sapiens | ENSG00000063978 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015149 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000007382 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001767 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029110 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000160 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004998 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010776 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025865 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000017017 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011101 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000011244 | 1 retrocopy |
retro_tsyr_1606 ,
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