RetrogeneDB ID: | retro_tsyr_1749 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_56773:3593..4500(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RFFL | ||
Ensembl ID: | ENSTSYG00000008923 | ||
Aliases: | None | ||
Description: | ring finger and FYVE-like domain containing E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:24821] |
Percent Identity: | 87.87 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | QTCLDCKKHFCMTCSSQVGNGP-RLCLLCQRFRATAFQQEEFMRMNVKDLRDYLSLHDIITEMCQEKEEL |
QTCL.CKK.FCM..SS.V.N.P.RLCLLCQRF.AT.FQQEEFMRMNVKDLRDYLSLHDIITEMCQEKEEL | |
Retrocopy | QTCLGCKKNFCMISSSLVENRP<RLCLLCQRFQATGFQQEEFMRMNVKDLRDYLSLHDIITEMCQEKEEL |
Parental | VLLVFGQQPVISQESRTRVPTLSLDFLGHQAFLTQPHASTVPPTSPNLPSSSPQATSVTPGLAQESQQAN |
VLLVFGQQPVISQESRTRVPTLSLDFLGHQAFLTQPHASTVPPTSPNLPSSSPQATSVTPGLAQESQQAN | |
Retrocopy | VLLVFGQQPVISQESRTRVPTLSLDFLGHQAFLTQPHASTVPPTSPNLPSSSPQATSVTPGLAQESQQAN |
Parental | GHVSQDQEDPIYLESTARAPAEDETQSIDSEDS-FVPGRRASLSDLTDLEDIEGLTVRQLKEILARNFVN |
GHVSQDQEDPIYLESTAR.PAEDET.S.DSE....V.G.R.SLSDLTDL.DIE.L.V.QLKEILA.NF.N | |
Retrocopy | GHVSQDQEDPIYLESTARVPAEDETHSTDSEHN<LVLGGRTSLSDLTDLQDIESLIVQQLKEILACNFIN |
Parental | YKGCCEKWELMERVTRLYKDQKGLQHLVCGAEDQNGGALPSGLEENLCKICMDSPIDCVLLECGHMVTCT |
YKGCCEKWELME.VTRLYKDQKGL.HLVCGAEDQN.GALPSGLEENLC.ICM.SP.DC.LLECGHMVTCT | |
Retrocopy | YKGCCEKWELMESVTRLYKDQKGL*HLVCGAEDQNEGALPSGLEENLCQICMNSPTDCILLECGHMVTCT |
Parental | KCGKRMNECPICRQYVIRAVHVFRS |
KCGK.MNECPIC.QYVI..VHVFRS | |
Retrocopy | KCGKHMNECPICQQYVI*VVHVFRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001950 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000012628 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011769 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008923 | 2 retrocopies |
retro_tsyr_1749 , retro_tsyr_2060,
|