RetrogeneDB ID: | retro_tsyr_1756 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_569820:45..645(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VIM | ||
Ensembl ID: | ENSTSYG00000004937 | ||
Aliases: | None | ||
Description: | vimentin [Source:HGNC Symbol;Acc:12692] |
Percent Identity: | 81.5 % |
Parental protein coverage: | 71.94 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | EMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVS |
EML.REEAESTLQSF.QDVDNASLARLDLE.KVESL.EEIAFLKK.HDE.IQEL.AQIQE.HVQ.DV.VS | |
Retrocopy | EMLWREEAESTLQSFSQDVDNASLARLDLEGKVESLREEIAFLKKRHDEAIQELRAQIQELHVQVDVEVS |
Parental | KPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVD |
KPDLTAAL....QQY.SVAAKNLQEAEEWYK.KFADLS.AAN.NNDAL.QA.Q.SNE.RR..QSLTCEVD | |
Retrocopy | KPDLTAALLHICQQYGSVAAKNLQEAEEWYKTKFADLSGAANWNNDALCQANQASNESRR*AQSLTCEVD |
Parental | ALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKM |
AL.GTNESLE.Q..E.EENFAVE.ANYQDTIGRL..EIQN.KE.MA.HL.EYQDLL.VKM | |
Retrocopy | ALQGTNESLECQTCETEENFAVEIANYQDTIGRLKREIQNTKE*MAPHLLEYQDLLSVKM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000008688 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011305 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004937 | 2 retrocopies |
retro_tsyr_1756 , retro_tsyr_564,
|