>retro_tsyr_1882
AAATCCGCTGCAGCCTGGGCCAATCAGTCACATCACATTGGAATATAACTACCACTGAAAACAATCGGCAAGGGGAATTT
TGCCAAGGGTAAGCTGTCAAAGATGTCGTCACAGACAGTGAGGTTACCTTAAAAGAAATTAACAAAAGAAGGTTGGATCC
AGCAATTCTACAAAGGCTGTTCAGCAAGGTCAGAATAATGAAGCGTTTACACCACCCCAATACAGTTAACTTGGTTGAAG
CTATTGACACAGATAAAAACTCCATCTGATCATGGAATACGCAAGCAGAGGAGAGGTATTTGAATATATGTCTGTTCATG
GAAAATGGTAGAAGAACAAGCAAGACAGATATTTAGTCAGATCCTGTGAGCAATACAGTACTGTCATCAACAACATATTG
TCCACCAAGACCTCAAACTGGACAGCATGCTATTCAAAGCCAACATGAATATCAAGTTAGTCGACTTTGGTTTTGGAAAT
GAGTTCACTGCCGGGAAAAAACTAGTCACTTTTTATGGCAGCCTTTCCTACTCTGCCCCAGATCTCTTTCAGGGCAGAGA
ATACAATGGGCCAGAGGTCAACTTGTGGAGCCTTGGAATCATTTTCTACTTGCTCCTCAGTGGCTCATTTCCTGTTGTCA
GACAAAGTGAGAAGGAGCACAAAAAGAAAATATTGTGAAGGAAATACAAAATCCCCTTTTACATATCAATAGATTGTGAA
AAACAACGAAACACTTCCTAGTTATAGATCCACTGAAATGAGGCACTCTCAAGGAAATCCTAAGGAACAATTGGGTCAAT
GCAGGGCATGAAGAAGATGAACTGAAACCATTTCTGGATCCAGAACAAGAC
ORF - retro_tsyr_1882 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
51.56 % |
Parental protein coverage: |
67.7 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | RNSATSADEQPHIGNYRLLKTIGKGNFAKVKLA-RHILTGKEXXXXXXXXXXXXXXXXXXLFREVRIMKV |
| ...A..A....HIG....LKTIGKGNFAK.KL......T..E..................LF..VRIMK. |
Retrocopy | KSAAAWANQSHHIGI*LPLKTIGKGNFAKGKLS<KDVVTDSEVTLKEINKRRLDPAILQRLFSKVRIMKR |
|
Parental | LNHPNIVKLFEVIETEKT-LYLVMEYASGGEVFDYLVAHGR-MKEKEARAKFRQIVSAVQYCHQKFIVHR |
| L.HPN.V.L.E.I.T.K..L.L.MEYAS.GEVF.Y...HG..M.E..AR..F.QI..A.QYCHQ..IVH. |
Retrocopy | LHHPNTVNLVEAIDTDKN<LHLIMEYASRGEVFEYMSVHGK<MVEEQARQIFSQIL*AIQYCHQQHIVHQ |
|
Parental | DLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLV |
| DLK....L..A.MNIK..DFGF.NEFT.G.KL.TF.GS..Y.AP.LFQG..Y.GPEV..WSLG.I.Y.L. |
Retrocopy | DLKLDSMLFKANMNIKLVDFGFGNEFTAGKKLVTFYGSLSYSAPDLFQGREYNGPEVNLWSLGIIFYLLL |
|
Parental | SGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCE-NLLKKFLILNPSKRGTLEQIMKDRWMNVGHEDDEL |
| SGS.P...Q..KE.....L..KY.IPFY.S.DCE....K.FL...P.K.GTL..I....W.N.GHE.DEL |
Retrocopy | SGSFPVVRQSEKEHKKKIL*RKYKIPFYISIDCE<KTTKHFLVIDPLK*GTLKEILRNNWVNAGHEEDEL |
|
Parental | KPYVEPLPD |
| KP...P..D |
Retrocopy | KPFLDPEQD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1882 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
11 retrocopies.