>retro_dnov_1691
GCAGCCATGAGTGCTGAGGAGGAGACCCACCTCAAGAACTATCGGTTCCTGAGAACTATAGGAAAGGGGGCCTTTTCTCT
GATAAAATTAGCATGACACATCCTCACCAGCCATGAGGTGGCTGTGAAAACCATACAGAAAGATGAAGACCCCAGCAGGC
TCCTCATGCTCTCCAGAGAGGTCAGCAAAATGAAGACGTTGAGCCATCCCAAAATCATCCAGCTGTTTGAAATTATTGAG
AACAAGGAATTCTACCTCATGATGGAGTATGCCAGTGGAGGTGATCTCTTTAACTACCTGGTAGCCCAGGGCCCTCTATT
AGAACAGGAAGCCCAAGGGAAATTTCACCAAGTCATATCTGCCATCCAGTACTGTTACCGGAAATTTATTTCCCACAGGG
ACTTGAAAGCAGATAACTTGCTTTTGGATGCTGCTGTGAATGTCAAACTTGCTGATTTTGGCTTGAGTAATATATTTAAC
ATCGACCAGTAGCTGACAACCCTGTGTGGCACTCCCTATTATACTGCCCCTGAAATATTTAAGGAGCACACATATGATGG
GCCTGCTGTCGATGTCTAGAGGCTGGGGGTAATTCTATACACCATGGCCAGTGGGGATCTCCCATTTGCTGCCAGAGCTT
CCAGGCCCTGTGGGAGCAGGTGCTCAGCAGGGAGCTCCCCATTCCAGACCACCTGGCTGTGGATTGTAGGAATCTCCTCA
GAAAGTGCCTGACGGTGGATCCCTGTAAGAGGACAGGCTGCCAGAATGTGATGAGCAACCCATGAGTAAGTACGGACTGT
GAGCACAGAGAATTGAAGGCATATGTGGAGCCCCTCCCAGATTGCCAGGATCCCCACCAGACAGCAATGATAGTTACCAT
GGGCTACAAAATGGAAGAGATACAGGAGTCCTTGAGAGATGTGAAACATGACGAGATCATGGCCGTCTATCTCTTGCTGG
GCCACAGCAGATGGGAGCAGGAGACCTCCACCAGCGCCCAGCAGAACCAGCCCTCACATGGCCAGAGGCACAGCCGCCCT
CCTTCCCCACACCACGTGGAGCAGCACAGCATGTCTGCCCAGCCCAGGCAGCAAAGAGGCAGCGAACCTGCCTTCTCCCC
CCTGATTGCTTGTCTACAGTCCTTCAACACAGGGAGAAGGACCAGAATTCAGGGAGGGAGGCTTGGAGCCTGAGCAACAC
ATATGCCAGCCCCCTGCCAGACCAGGAGTGGGAGAAGCCCACCTCTGTGCTCTCCCACCAGAGCTTCCCCCCGTCCCAGT
CAGCCCTGCAGCTCTCCTCTCCTGTGGAGGACCAGCCTCAGCCAGGCCTTCATGGACGAGGGC
ORF - retro_dnov_1691 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
61.15 % |
Parental protein coverage: |
61.1 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | SATSADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNH |
| .A.SA.E..H..NYR.L.TIGKG.F...KLA.HILT..EVAVK.I.K.....S.L..L.REV..MK.L.H |
Retrocopy | AAMSAEEETHLKNYRFLRTIGKGAFSLIKLA*HILTSHEVAVKTIQKDE-DPSRLLMLSREVSKMKTLSH |
|
Parental | PNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKFIVHRDLKAE |
| P.I..LFE.IE..K..YL.MEYASGG..F.YLVA.G...E.EA..KF.Q..SA.QYC..KFI.HRDLKA. |
Retrocopy | PKIIQLFEIIEN-KEFYLMMEYASGGDLFNYLVAQGPLLEQEAQGKFHQVISAIQYCYRKFISHRDLKAD |
|
Parental | NLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP |
| NLLLDA..N.K.ADFG.SN.F.....L.T.CG.P.Y.APE.F....YDGP.VDV..LGVILYT..SG.LP |
Retrocopy | NLLLDAAVNVKLADFGLSNIFNIDQ*LTTLCGTPYYTAPEIFKEHTYDGPAVDV*RLGVILYTMASGDLP |
|
Parental | FDG-QNLKDLWRQELNEEY-IPVYLSVDCVNLILKFLSIDPCKRTILQHIMHNPWVNVDYEHQELKPNVE |
| F...Q....LW.Q.L..E..IP..L.VDC.NL..K.L..DPCKRT..Q..M.NP.V..D.EH.ELK..VE |
Retrocopy | FAA<QSFQALWEQVLSRELPIPDHLAVDCRNLLRKCLTVDPCKRTGCQNVMSNP*VSTDCEHRELKAYVE |
|
Parental | PLVDYQDSHWIAMMVTMGYTMEEVKESLANVKHDLIMATYLVLGYSRWEQETSTIVLQPQPSPGQRHCHP |
| PL.D.QD.H..AM.VTMGY.MEE..ESL..VKHD.IMA.YL.LG.SRWEQETST...Q.QPS.GQRH..P |
Retrocopy | PLPDCQDPHQTAMIVTMGYKMEEIQESLRDVKHDEIMAVYLLLGHSRWEQETSTSAQQNQPSHGQRHSRP |
|
Parental | PSPHPVEQHSMSSQPR-QRYSESA-VLPSDSLFKTI--TEKD-NSGRKA-SMTNTYARPLPDKEWEKPIS |
| PSPH.VEQHSMS.QPR.QR.SE.A..LP.D.L.......EKD.NSGR.A.S..NTYA.PLPD.EWEKP.S |
Retrocopy | PSPHHVEQHSMSAQPRQQRGSEPA<LLPPDCLSTVLQHREKDQNSGREAWSLSNTYASPLPDQEWEKPTS |
|
Parental | VPSH-SFPTT-SQPCSTPLLQRISLSKAFTDKG |
| V.SH.SFP...SQPCS.PLL.R.SLS.AF.D.G |
Retrocopy | VLSHQSFPPS>SQPCSSPLLWRTSLSQAFMDEG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
51 .53 RPM |
SRP012922_cerebellum |
0 .00 RPM |
24 .33 RPM |
SRP012922_heart |
0 .00 RPM |
8 .35 RPM |
SRP012922_kidney |
0 .00 RPM |
15 .06 RPM |
SRP012922_liver |
0 .00 RPM |
8 .82 RPM |
SRP012922_lung |
0 .00 RPM |
23 .98 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
7 .96 RPM |
SRP012922_spleen |
0 .00 RPM |
24 .95 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1691 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
12 retrocopies.