RetrogeneDB ID: | retro_tsyr_1907 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_65189:10004..10728(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN3 | ||
Ensembl ID: | ENSTSYG00000010749 | ||
Aliases: | None | ||
Description: | calponin 3, acidic [Source:HGNC Symbol;Acc:2157] |
Percent Identity: | 86.53 % |
Parental protein coverage: | 80.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | IASKYDHQAEEDLRNWIEEVTGMSIGTNFQLGLKDGIILCELINKLQPGSVKKVNESSLNWPQ-LENIGN |
IASKYDHQAEEDL.NWIEEVTGM.IGTNF.LGLKD.IILCELINKLQPGSVK.V.ESSLNWP..LENI.N | |
Retrocopy | IASKYDHQAEEDLHNWIEEVTGMNIGTNF*LGLKDSIILCELINKLQPGSVK-VKESSLNWPS<LENIDN |
Parental | FIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTIDIGVKYAEKQTRRFDEGKLK |
FIKAIQAYGMKPHDIFEANDLFENGN.TQVQTTLVALAGLAKTKGFHTTI.I.VKY.EKQTRRF.EGKLK | |
Retrocopy | FIKAIQAYGMKPHDIFEANDLFENGNTTQVQTTLVALAGLAKTKGFHTTIHISVKYSEKQTRRFGEGKLK |
Parental | AGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGTNKGASQ-AGMLAPGTRRD |
AGQSV.GLQMGTNKCASQ.GM..YGTRRH.YDPKMQTD.PFDQTT.SLQ.GTNK.ASQ..GMLAPGTRRD | |
Retrocopy | AGQSVTGLQMGTNKCASQVGMMTYGTRRHFYDPKMQTDRPFDQTTVSLQVGTNKEASQ<GGMLAPGTRRD |
Parental | IYDQKLTLQPVDNSTISLQMGTNKVASQKGIHHIG |
IYDQK.TLQPV.NSTISLQM.TNKV.SQKG....G | |
Retrocopy | IYDQKQTLQPVNNSTISLQMSTNKVTSQKGMSVYG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018128 | 3 retrocopies | |
Equus caballus | ENSECAG00000020188 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010095 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002921 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000004326 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011207 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000000979 | 15 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002670 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001645 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000010749 | 2 retrocopies |
retro_tsyr_1458, retro_tsyr_1907 ,
|
Vicugna pacos | ENSVPAG00000004889 | 2 retrocopies |