>retro_tsyr_2014
ATGCACGGCCAGCTCAACGGCTTCCACGAGGCGTTCATCGAGGCGGGCACCTTCCTCTTCACCTCCAAGTTCATGGAGGA
AGCCACCCAAATAAGATCTGTGACCAGATCAGCGATCTGTCCTTGATGCCCACCTTCAGCAGGATCCTGATGCCAAATGG
CTTGCGAAACTGTTGCTAAGACCGGAATGATCCTTCTTGCTGGAGAAATTACATCCAGAGCTGCTGTTGACTACCAGAAA
GTGGTTCGTGAAGCCATTCAACACATTGGATATGATGATTCATCCAAAGGGTTTGACTACAAGACTTGTAATGTGTTGGT
GGCCCTGGAGCAGCAGTCACCAGATATTGCCCAAGGTGTTCATCTTGACCAGAATGAAGAAGACATTGGCGCTGGAGACC
AGGGCTTGATGTTTGGCTATACCACTGATGAAACTGAGGAATGTATGCCTTTAACCATTGTCTTGGCACACATGCTCAAT
GTCAAACTGGCAGAACTGCGCCGCAATGGCACTTTGCCTTGGTTACGCCCTGATTCGAAAACTCAAGTGACCGTGCAGTA
TATGCAGGATCGAGGTGCTGTGCTTCCTATTAGAGTCCACACAATTGTTATATCTGTTCAGCATGATGAAGAAGTTTGTC
TCGATGAGATGAGGGATGCCCTAAAGGAAAGGGTCATCAAAGCTGTGGTGCCTGCAAAATATCTCGATGAGGACACAATC
TACCATCTGTAGCCTAGTGGCAGATTTATTATTGGTGGGCCTCAGGGTGATGCTGGTTTGGCCAGAAAATCACTGTGGAC
ACTTATGGCGGCTGGGGAGCTCATAGAGGAGGTGCCTTTTCGGAAAAGGATTATACCAAGGTGGACCTTTTCGCTGCTTA
TGCTGCTCGTTGGGTGGCAAAGTCCCTTGTTAAAGAGGTCTGTGCAGGAGGGTTCTTGTTCAGGTCTCTTATGCTATTGG
AGTTTCTCATCCATTGTCTATCTCCATTTTCCATTATGGTACAGAAGAGTGAGAGAGAGCTATTATG
ORF - retro_tsyr_2014 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.36 % |
Parental protein coverage: |
97.19 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | MNGPVDGLCDHSLTEEGAFMFTSESV-GEGHPDKICDQISD-AVLDAHLKQDPNAK-VACETVCKTGMVL |
| M.G...G.......E.G.F.FTS....G..HP.KICDQISD..VLDAHL.QDP.AK..ACETV.KTGM.L |
Retrocopy | MHGQLNGFHE-AFIEAGTFLFTSKFM<GGSHPNKICDQISD<SVLDAHLQQDPDAK<MACETVAKTGMIL |
|
Parental | LCGEITSVAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCVHLDRNEEDVGAGDQG |
| L.GEITS.A.VDYQ.VVR..I.HIGYDDS.KGFD.KTCNVLVALEQQSPDIAQ.VHLD.NEED.GAGDQG |
Retrocopy | LAGEITSRAAVDYQKVVREAIQHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVHLDQNEEDIGAGDQG |
|
Parental | LMFGYATDETEECMPLTIILAHKLNARMADLRRSGVLPWLRPDSKTHVTVQYTQDNGAVIPVRIHTIVIS |
| LMFGY.TDETEECMPLTI.LAH.LN...A.LRR.G.LPWLRPDSKT.VTVQY.QD.GAV.P.R.HTIVIS |
Retrocopy | LMFGYTTDETEECMPLTIVLAHMLNVKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVIS |
|
Parental | VQHNEDITLEEMRGALKEQVIRAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGVTGRK-IIVDTYGGWG |
| VQH.E...L.EMR.ALKE.VI.AVVPAKYLDEDTIYHL.PSGRF.IGGPQGDAG...RK.I.VDTYGGWG |
Retrocopy | VQHDEEVCLDEMRDALKERVIKAVVPAKYLDEDTIYHL*PSGRFIIGGPQGDAGL-ARK<ITVDTYGGWG |
|
Parental | AHGGGAFSGKDYTKVDRSAAYAARWVAKSLVK-AGLCRRVLVQFPYAIGVAEPLSISLFTYGTSKTYREL |
| AH.GGAFS.KDYTKVD..AAYAARWVAKSLVK..GLCRRVLVQ..YAIGV..PLSIS.F.YGT....R.. |
Retrocopy | AHRGGAFSEKDYTKVDLFAAYAARWVAKSLVK<RGLCRRVLVQVSYAIGVSHPLSISIFHYGTEE*ERAI |
|
Parental | L |
| . |
Retrocopy | M |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_2014 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.