RetrogeneDB ID: | retro_tsyr_267 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_6726:16229..17402(-) | ||
Located in intron of: | ENSTSYG00000003930 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUP43 | ||
Ensembl ID: | ENSTSYG00000000944 | ||
Aliases: | None | ||
Description: | nucleoporin 43kDa [Source:HGNC Symbol;Acc:21182] |
Percent Identity: | 99.74 % |
Parental protein coverage: | 89.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LLTLPPAVALGMEEIYAKFVSQKISKTRWRPVPSGSLQTAETFATGSWDNEENYVSLWSIGDFGNLDSDG |
.LTLPPAVALGMEEIYAKFVSQKISKTRWRPVPSGSLQTAETFATGSWDNEENYVSLWSIGDFGNLDSDG | |
Retrocopy | VLTLPPAVALGMEEIYAKFVSQKISKTRWRPVPSGSLQTAETFATGSWDNEENYVSLWSIGDFGNLDSDG |
Parental | GFEGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGSVTVFLHHPNNQTLSVNQQWTAAHYHTGPGSPSY |
GFEGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGSVTVFLHHPNNQTLSVNQQWTAAHYHTGPGSPSY | |
Retrocopy | GFEGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGSVTVFLHHPNNQTLSVNQQWTAAHYHTGPGSPSY |
Parental | SSAPCTGIVCSNPEIVTVGEDGRINFFRADHKEALRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWD |
SSAPCTGIVCSNPEIVTVGEDGRINFFRADHKEALRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWD | |
Retrocopy | SSAPCTGIVCSNPEIVTVGEDGRINFFRADHKEALRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWD |
Parental | FRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF |
FRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF | |
Retrocopy | FRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF |
Parental | HPSNPDHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRTSTFLSHSISNQANVHQSLISSWLSTDPAKDR |
HPSNPDHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRTSTFLSHSISNQANVHQSLISSWLSTDPAKDR | |
Retrocopy | HPSNPDHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRTSTFLSHSISNQANVHQSLISSWLSTDPAKDR |
Parental | IEITSLLPNKTLSVNSLDVLGPCLVCGTDAEAIYVTRQLFS |
IEITSLLPNKTLSVNSLDVLGPCLVCGTDAEAIYVTRQLFS | |
Retrocopy | IEITSLLPNKTLSVNSLDVLGPCLVCGTDAEAIYVTRQLFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009426 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000010815 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009830 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016808 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000013449 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000944 | 1 retrocopy |
retro_tsyr_267 ,
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