RetrogeneDB ID: retro_tsyr_366

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_104175:6233..6656(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WASF3
• Ensembl ID: ENSTSYG00000005184
• Aliases: None
• Description: WAS protein family, member 3 [Source:HGNC Symbol;Acc:12734]

Sequence

>retro_tsyr_366
AGGAACATCAACGTGGAAAATACTCTCAGAAGTTCCACAGTTCAAGACCAGCAGGTGGTATCAAAGAATAGCATTCCTAA
TCCTGCCGCTCACATTTAGCCAGTGATGGATCACCTCCTCTGAATGTCCTGACACCACATGGTAATGACAAGGATGAGAT
GAAGTTCTATACTGATCTTTCCTATTTCTTTGACCCTTGGAAAAAACAAGCACTACAGGACACAGAAGACAAAAGGAAAG
AGAAAAGACATCAACAGGAACAAAAGCATATAGATGGCATCACCTGCAAGATGAAAGGGATTTAATACAGACAGAAATAG
TTGCCAGGAATGGAATGTGATGTCATATGACAAAGTGCTTAGACCTGACAACAAGGTGTCACAGAGTAGACTATGGAGCG
CCTCCAAGGGATCCCTGTTTCCA

Alignment

ORF - retro_tsyr_366 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.64 %
• Parental protein coverage: 54.75 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QDINMKKAFKSSTVQDQQVVSKNSIPNPVADIYNQSD-KPPPLNILTPYRDDKKDGLKFYTDPSYFFDLW
          ..IN......SSTVQDQQVVSKNSIPNP.A.I....D..PP.LN.LTP...D.KD..KFYTD.SYFFD.W
Retrocopy RNINVENTLRSSTVQDQQVVSKNSIPNPAAHI*PVMD<SPP-LNVLTPHGND-KDEMKFYTDLSYFFDPW

Parental  KEKMLQDTEDKRKEKRRQKEQKRIDGTTREVKKV-RKARNRRQEWNMMAYDKELRPDNRLSQSVYHGASS
          K...LQDTEDKRKEKR.Q.EQK.IDG.T...K......RN..QEWN.M.YDK.LRPDN..SQS....A.S
Retrocopy KKQALQDTEDKRKEKRHQQEQKHIDGITCKMKGI>NTDRNSCQEWNVMSYDKVLRPDNKVSQSRLWSA-S

Parental  EGSLSP
          .GSL.P
Retrocopy KGSLFP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_366 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000132970	1 retrocopy	retro_hsap_3574,
Gorilla gorilla	ENSGGOG00000012518	1 retrocopy	retro_ggor_2411,
Tarsius syrichta	ENSTSYG00000005184	3 retrocopies	retro_tsyr_1561, retro_tsyr_366 , retro_tsyr_407,