RetrogeneDB ID: | retro_tsyr_480 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_12475:33539..34177(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | METAP1 | ||
Ensembl ID: | ENSTSYG00000004984 | ||
Aliases: | None | ||
Description: | methionyl aminopeptidase 1 [Source:HGNC Symbol;Acc:15789] |
Percent Identity: | 73.95 % |
Parental protein coverage: | 55.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LACIARN-CYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIINVDITVYRNGYHGDLSETFFVGD |
LA.IARN.CY.SPL.YYNF.K.CCTS.N.VICHGIPDR.PLQEG.I.NV.IT.Y.NG.H.DL..TF..GD | |
Retrocopy | LAHIARN>CYLSPLSYYNFSKFCCTSLNVVICHGIPDRWPLQEGNIVNVTITLYCNGCHRDLNVTFYFGD |
Parental | VDEGARKLVQTTYECLMQAVDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYA |
VDEGA.KL.QT.Y.CLMQ...AVK.GV...EL.N.IQKHAQANGFSVV.SY.GHGIHKLFHTAPN.PHYA | |
Retrocopy | VDEGAWKLIQTIYMCLMQVINAVKSGVQDGELRNNIQKHAQANGFSVV*SYSGHGIHKLFHTAPNTPHYA |
Parental | KNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKCSAQFEHTLMVMDTNCDILTW-QLDSAR |
KNKAVGVMKSGHVFT.EPMICEG.WQD.TWPDGWTA.TR..K.SAQ..HTL.V.D..C.ILTW..L.S.. | |
Retrocopy | KNKAVGVMKSGHVFTVEPMICEGVWQDKTWPDGWTAMTRQRK*SAQYNHTLLV-DPGCEILTW>DLESMW |
Parental | PHFVS |
PHF.S | |
Retrocopy | PHFIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Gorilla gorilla | ENSGGOG00000001520 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015636 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004984 | 2 retrocopies |
retro_tsyr_1836, retro_tsyr_480 ,
|
Tursiops truncatus | ENSTTRG00000002515 | 1 retrocopy |