RetrogeneDB ID: retro_ogar_288

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873619.1:6112886..6114047(+)
• Located in intron of: ENSOGAG00000006740

Retrocopy information

• Ensembl ID: ENSOGAG00000029724
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000015636
• Aliases: None
• Description: None

Sequence

>retro_ogar_288
ATGGCGGCTGTGGAGACGCGGGTGTGCGAAACAGACGGCTGCAACAGTGAGGCCAAGCTCCAGTGTCCCACCTGCATCAA
GCTGGGCATCCAGGGCTCGTACTTCTGCTCGCAGGAATGTTTTAAAGGAAGTTGGGCTACTCACAAGTTACTACATAAGA
AAGCGAAAGATGAAAAGGCAAAGAGAGAAGTGTCTTCCTGGACCGTGGAAGGTGATATTAACACTGACCCATGGGCAGGT
TATCGGTATACTGGTAAACTCAGACCACATTATCCACTGATGCCAACAAGGCCAGTGCCAAGTTATATACAAAGACCAGA
TTATGCTGATCATCCCTTAGGAATGTCTGAATCTGAACAGGCTCTTAAAGGTACTTCGCAAATTAAATTACTCTCATCTG
AAGATATAGAAGGGATGAGACTTGTATGTAAGCTCGCTAGAGAAGTTTTGGATATTGCTGCTGAGATGATTAAACCAGGT
GTAACTACTGAAGAAATCGATCATGCTGTACACTTAGCATGTATTGCAAGAAATTGCTATCCTTCTCCCCTGAATTATTA
TAATTTCCCAAAATCTTGTTGTACCTCAGTAAATGAAGTCATCTGCCATGGAATTCCAGACAGACGGCCCTTGCAAGAAG
GTGATATTGTTAATGTGGACATCACTCTCTATCGCAATGGTTATCATGGAGACCTGAATGAGACATTTTTTGTTGGAGAC
GTGGATGAGGGAGCGCAGAAACTCGTTCAGACCACGTATGAGTGCCTGATGCAAGCCATTGATGCAGTCAAACCTGGTGT
TCGATACAGAGAATTGGGAAACATTATTCAGAAGCATGCCCAAGCAAATGGGTTTTCAGTTGTTCGAAGTTATTGTGGGC
ATGGAATCCACAAGCTTTTTCATACAGCCCCCAATGTACCCCACTATGCCAAAAATAAAGCAGTTGGAGTGATGAAGTCA
GGCCATGTGTTTACAATTGAGCCAATGATTTGTGAAGGTGGATGGCAGGATGAAACCTGGCCAGATGGTTGGACTGCGGT
GACAAGGGATGGAAAGCGGTCTGCTCAGTTCGAGCACACCCTGTTGGTCACGGACACTGGCTGTGAAATCCTAACCCAGC
GACTTGATAATGCGCGGCCTCACTTCATGTCCCAGTTTTAA

Alignment

ORF - retro_ogar_288 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.48 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAVETRVCETDGCNSEAKLQCPTCIKLGIQGSYFCSQECFKGSWATHKLLHKKAKDEKAKREVSSWTVE
          MAAVETRVCETDGCNSEAKLQCPTCIKLGIQGSYFCSQECFKGSWATHKLLHKKAKDEKAKREVSSWTVE
Retrocopy MAAVETRVCETDGCNSEAKLQCPTCIKLGIQGSYFCSQECFKGSWATHKLLHKKAKDEKAKREVSSWTVE

Parental  GDINTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR
          GDINTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR
Retrocopy GDINTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR

Parental  LVCKLAREVLDIAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRP
          LVCKLAREVLDIAA.MIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRP
Retrocopy LVCKLAREVLDIAAEMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRP

Parental  LQEGDIVNVDITLYRNGYHGDLNETFFVGDVDEGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHA
          LQEGDIVNVDITLYRNGYHGDLNETFFVGDVDEGA.KLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHA
Retrocopy LQEGDIVNVDITLYRNGYHGDLNETFFVGDVDEGAQKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHA

Parental  QANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRD
          QANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRD
Retrocopy QANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRD

Parental  GKRSAQFEHTLLVTDTGCEILTQRLDNARPHFMSQF
          GKRSAQFEHTLLVTDTGCEILTQRLDNARPHFMSQF
Retrocopy GKRSAQFEHTLLVTDTGCEILTQRLDNARPHFMSQF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_288 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000001520	1 retrocopy	retro_ggor_789,
Otolemur garnettii	ENSOGAG00000015636	1 retrocopy	retro_ogar_288 ,
Tarsius syrichta	ENSTSYG00000004984	2 retrocopies	retro_tsyr_1836, retro_tsyr_480,
Tursiops truncatus	ENSTTRG00000002515	1 retrocopy	retro_ttru_1077,