RetrogeneDB ID: | retro_tsyr_938 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_2481:38894..39378(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC20 | ||
Ensembl ID: | ENSTSYG00000012703 | ||
Aliases: | None | ||
Description: | cell division cycle 20 [Source:HGNC Symbol;Acc:1723] |
Percent Identity: | 82.1 % |
Parental protein coverage: | 56.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SHSAGRTPGRTPGKSSSKVQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPEDNQTPTKKEHQKAWAL |
.H...RTPG.T.GK.SSK.QTTPSKPG..RYIP..SASQMEV.SFLLS.ENQP.DNQTP.KKEHQKAWAL | |
Retrocopy | AHPGCRTPGQTLGKFSSKDQTTPSKPGSNRYIPYGSASQMEVTSFLLS*ENQPGDNQTPPKKEHQKAWAL |
Parental | NLNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKT-CRYIPSLPDRILDAPEIRNDYYL |
NLNGFDVEEAKIL.LSGKPQNAPE.YQNRLKVLYSQK..P.SS.KT.C.YIPSLPD.ILDAPEIRNDYYL | |
Retrocopy | NLNGFDVEEAKILPLSGKPQNAPESYQNRLKVLYSQKVMPVSSQKTCCCYIPSLPDGILDAPEIRNDYYL |
Parental | NLVDWSSGNV-LAVALDNSVYL |
NLV..SSGNV.L.VALDNSVYL | |
Retrocopy | NLVVGSSGNV>LTVALDNSVYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006680 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000003414 | 1 retrocopy | |
Homo sapiens | ENSG00000117399 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010419 | 1 retrocopy | |
Mus musculus | ENSMUSG00000006398 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013419 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001448 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000634 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012703 | 3 retrocopies |
retro_tsyr_1560, retro_tsyr_442, retro_tsyr_938 ,
|
Tursiops truncatus | ENSTTRG00000010813 | 1 retrocopy |