RetrogeneDB ID: | retro_tsyr_975 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_26086:16648..17111(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM92A1 | ||
Ensembl ID: | ENSTSYG00000012502 | ||
Aliases: | None | ||
Description: | family with sequence similarity 92, member A1 [Source:HGNC Symbol;Acc:30452] |
Percent Identity: | 85.99 % |
Parental protein coverage: | 50.16 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | ELCQIFAAYVRKTARLRDKADLLVNELNLYASTETPHLKQGLQN-VADEFAKLQDYRQAEVERLETKVVE |
E.CQIFAAYVR.TARLRDKA.LLVNELNLYASTET..LKQGL.N..ADEFAKLQDYRQAE.ERLETKVVE | |
Retrocopy | ENCQIFAAYVRETARLRDKANLLVNELNLYASTETLQLKQGLKN<LADEFAKLQDYRQAEIERLETKVVE |
Parental | PLKAYGNIVKIKRDDLKETLRARNQEAKQLIQLERTRQRNPSDRHVIAQAESELHRATIAATRTSHHLEE |
PL.AYG..VKIK....KETLRARNQEAKQLIQLERTR.RNPSDRHVI.QAESELHRATIAAT..SHHLEE | |
Retrocopy | PL*AYGTTVKIKQVHFKETLRARNQEAKQLIQLERTRRRNPSDRHVISQAESELHRATIAAT*ISHHLEE |
Parental | TIDNFEKKK-IKDIKTI |
TIDNFEK.K.IKDIKTI | |
Retrocopy | TIDNFEKQK<IKDIKTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009105 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013003 | 1 retrocopy | |
Homo sapiens | ENSG00000188343 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006452 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003954 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006797 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007447 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000009112 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002773 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002972 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000002446 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011171 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018744 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000012502 | 1 retrocopy |
retro_tsyr_975 ,
|
Tursiops truncatus | ENSTTRG00000012378 | 1 retrocopy |