RetrogeneDB ID:

retro_ttru_1027

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_100410:68596..69202(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PPID
Ensembl ID:ENSTTRG00000016269
Aliases:None
Description:peptidylprolyl isomerase D [Source:HGNC Symbol;Acc:9257]


Retrocopy-Parental alignment summary:






>retro_ttru_1027
GGTGAGAAACCTGCCAAATTGTACGTTATTGCAGAATGCGGAGAACTGAAGGAAGGGGATGATTGGGGAATATTCCCAAA
GGATGGATCTGGTGACAGTCATCCAGACTTCCCAGAGGATGCAGACATAGATTTAAAAGATGTAGATAAAATTTTACTAA
TAACAGAAGACTTAAAAAACATTGGAAATACTTGTTTCAAATCCCAGAACTGGGAGATGGCCATTAAAAAATACACAAAA
GTTTTAAGGTATGTGGAAGGCTCGAAGGCTGCTACTGAGAACGCAAGTGGAGCAAAGCTGCAGCCTGTCACTTTGAGCTG
CGGGCTGAATATCGGCGCCTGGAAACTGAAGATGTCTGATTGGCAGGGAGCAGTCGACAGTTGTTTGGAGGCCCTTGAAA
TAGATCCAGCAAATACCAAAGCACTGTACCGTAGAGCCCAAGGATGGCAAGGACTAAAAGAATACAATCGAGCATTGGCT
GATCTTAAGAAAGCTCAGGAGATTGCACCAGAGGATAAAGCTATCCAGGCAGAATTGCTGAGAGTCAAGCAAAAGATAAA
GGCACAGAAAGATAAAGAGAAGGCACCTTATGCAAAAATGTTTGCT

ORF - retro_ttru_1027 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 92.57 %
Parental protein coverage: 54.59 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGEKPAKLCVTADCGELKGGDDWGIFPKDGSGDSHPDFPEDADIDVKDVDKILLITEDLKNIGNTFFKSQN
GEKPAKL.V.A.CGELK.GDDWGIFPKDGSGDSHPDFPEDADID.KDVDKILLITEDLKNIGNT.FKSQN
RetrocopyGEKPAKLYVIAECGELKEGDDWGIFPKDGSGDSHPDFPEDADIDLKDVDKILLITEDLKNIGNTCFKSQN
ParentalWEMAIKKYTKVLRYVEGSKAATENAGRAKLQPVTLSCLLNIGACKLKLSDWQGAVDSCLEALEIDPANTK
WEMAIKKYTKVLRYVEGSKAATENA..AKLQPVTLSC.LNIGA.KLK.SDWQGAVDSCLEALEIDPANTK
RetrocopyWEMAIKKYTKVLRYVEGSKAATENASGAKLQPVTLSCGLNIGAWKLKMSDWQGAVDSCLEALEIDPANTK
ParentalALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA
ALYRRAQGWQGLKEY..ALADLKKAQEIAPEDKAIQAELL.VKQKIKAQKDKEKA.YAKMFA
RetrocopyALYRRAQGWQGLKEYNRALADLKKAQEIAPEDKAIQAELLRVKQKIKAQKDKEKAPYAKMFA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1027 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1027 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000120691 retrocopy
Echinops telfairi ENSETEG000000126552 retrocopies
Macaca mulatta ENSMMUG000000177682 retrocopies
Rattus norvegicus ENSRNOG000000274081 retrocopy
Tursiops truncatus ENSTTRG00000016269 1 retrocopy
retro_ttru_1027 ,



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