RetrogeneDB ID:

retro_ttru_1212

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_107324:76723..77244(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RBPMS2
Ensembl ID:ENSTTRG00000011840
Aliases:None
Description:RNA binding protein with multiple splicing 2 [Source:HGNC Symbol;Acc:19098]


Retrocopy-Parental alignment summary:






>retro_ttru_1212
GGGCTCCCTGTGCATATTAAACCCAGAGAACTCTACCTGCTCTTCAGGCCATTCAGGGGTATGAAGGGTCCCTGATCAAG
CTCACATGGAGACAGCCTGTTGGTTCTGTGATCTTTGACAGCCAGGCAGGAACAGAAGCAGCCAAGAATGCATTGAATGG
TATTCGCTTTGACCCCGAGAACCCCCAGACCCTGAGGCGAGAGTTTGCCAAAGCCAACACCAAGATGGCCAAGAACAAGC
TAATGGCTACACCAAATCCCACCAATGCTCACCCCGCCCTAGGAGCACACTTCATCGCACAATACCCCTATGACCTGATG
GGGGCCACTCTGATTCCCGCATCCCTAGATGCCTGGGCCCCCTACCCTCTGTACACCACAGAGCTGACCCCAGCCATCTC
ACATGCTACGTGTACCTACCCAGCCACCACTGCTGCTGCCGCTGCCGCCTTACATGGTCAGGTGCACTGGTACCCTTCCT
CTGATACCACCCAGCAAGAATGGAAATATCGTCAGTTCTGT

ORF - retro_ttru_1212 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.57 %
Parental protein coverage: 85.22 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalGLPVDIKPRELYLLFRPFKG-YEGSLIKLTSRQPVGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEF
GLPV.IKPRELYLLFRPF.G.YEGSLIKLT.RQPVG.VIFDS.AG.EAAKNALNGIRFDPENPQTLR.EF
RetrocopyGLPVHIKPRELYLLFRPFRG<YEGSLIKLTWRQPVGSVIFDSQAGTEAAKNALNGIRFDPENPQTLRREF
ParentalAKANTKMAKNKLMATPNPTNAHPALGAHFIARDPYDLMGAALIPASPEAWAPYPLYTTELTPAISHAAFT
AKANTKMAKNKLMATPNPTNAHPALGAHFIA..PYDLMGA.LIPAS..AWAPYPLYTTELTPAISHA..T
RetrocopyAKANTKMAKNKLMATPNPTNAHPALGAHFIAQYPYDLMGATLIPASLDAWAPYPLYTTELTPAISHATCT
ParentalYPAATAAAAAALHA-VRWYPSSDTTQQGWKYRQFC
YPA.TAAAAAALH..V.WYPSSDTTQQ.WKYRQFC
RetrocopyYPATTAAAAAALHGQVHWYPSSDTTQQEWKYRQFC

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1212 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1212 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 38 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000110371 retrocopy
Callithrix jacchus ENSCJAG000000052002 retrocopies
Dipodomys ordii ENSDORG000000040251 retrocopy
Homo sapiens ENSG000001668312 retrocopies
Gorilla gorilla ENSGGOG000000089841 retrocopy
Loxodonta africana ENSLAFG000000187256 retrocopies
Macaca mulatta ENSMMUG000000132701 retrocopy
Monodelphis domestica ENSMODG000000104871 retrocopy
Mus musculus ENSMUSG000000323879 retrocopies
Nomascus leucogenys ENSNLEG000000125051 retrocopy
Otolemur garnettii ENSOGAG000000260171 retrocopy
Pongo abelii ENSPPYG000000065531 retrocopy
Pan troglodytes ENSPTRG000000071652 retrocopies
Sus scrofa ENSSSCG000000045491 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000100552 retrocopies
Tarsius syrichta ENSTSYG000000089963 retrocopies
Tursiops truncatus ENSTTRG00000011840 3 retrocopies
retro_ttru_1046, retro_ttru_1212 , retro_ttru_1790,



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