RetrogeneDB ID:

retro_ttru_1232

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_108056:132037..132391(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000002964
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_1232
TTAGTCAACCTCACCGTATTTTTTCTACGTCGCCATCAACAATGAGTCCCTGGACAGTGTCCCCTTTGAGCTTTTTGAAG
ACAAAGTTCCAAAGACAGCAGAAAGCTTTTGTGCTCTTAGCACTGGGAAGAAAGGTTATCAGGATTCCTGCTTTCACAGA
ATTATTCTGGGGTCTATGTGCCTGGGTGGAGACTTCCTATGCCTTAATGGCACTGGCGGCAAGTCCATCTATGGGGAAAA
GTTTGATGAGGAGAGCTTCATCTTGAAGCACACGGGTCCTGGTATCTGGCCCATGGCAAATTCTGGGCCCAACACAAACA
GTTCCAACTTTTTATTTGCATTGCCAAGACTGAG

ORF - retro_ttru_1232 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.49 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMVNPTVFF-DIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTR
.VN.TVFF...A...E.L..V.FELF.DKVPKTAE.F.ALSTG.KG..Y..SCFHRII.G.MC.GGDF..
RetrocopyLVNLTVFF>YVAINNESLDSVPFELFEDKVPKTAESFCALSTGKKG--YQDSCFHRIILGSMCLGGDFLC
ParentalHNGTGGKSIYGEKFDDENFLLKHTGPGILSMANAGPNTNGSQF-FICTAKTE
.NGTGGKSIYGEKFD.E.F.LKHTGPGI..MAN.GPNTN.S.F.FIC.AKTE
RetrocopyLNGTGGKSIYGEKFDEESFILKHTGPGIWPMANSGPNTNSSNF<FICIAKTE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1232 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1232 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 38 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG0000001159712 retrocopies
Monodelphis domestica ENSMODG000000160899 retrocopies
Tursiops truncatus ENSTTRG00000002964 16 retrocopies
Tursiops truncatus ENSTTRG000000143851 retrocopy



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