RetrogeneDB ID: retro_ttru_1409

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_112646:36553..36967(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ARL15
• Ensembl ID: ENSTTRG00000003681
• Aliases: None
• Description: ADP-ribosylation factor-like 15 [Source:HGNC Symbol;Acc:25945]

Sequence

>retro_ttru_1409
TGTTTTAGAGCACTCTGCTGCAACGGACCACCACCTGCATGCCCAGAGTATGACCTGGTCTGCATAGGCCTCATGGGCTC
TGGCAAGACCAGCCTGCTGTCTAATCTCTGCAGTGAAAATCCCGACAGCATTGTGTCAACCACAGGTTTTACTATAAAAG
CAGTGCCATTCCAGAATGTCATCTTGAATGTAAAAGAACTTGGAGGGGCTGATAATATCCAGAAATACTGGAGCCGCTAC
AACCAAGGATCTCAAGGAGTAATATATGTATTAGGCAGTGCCTCTTTAGAAGATGATTTAGAGACTGCTAGAAGTGAAAT
GCACTCAGCTCTTCAGCACCCACAACTATGCACTTTACCCTTTTTAATGTTGGCGAATCATCAAAACAAGCCAGCCGCTT
GATCAGTACCAGAG

Alignment

ORF - retro_ttru_1409 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.51 %
• Parental protein coverage: 81.66 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  CFRALCCKGPPPARPEYDLVCIGLTGSGKTSLLSKLCSESPNSVVSTTGFSIKAVPFQNAILNVKELGGA
          CFRALCC.GPPPA.PEYDLVCIGL.GSGKTSLLS.LCSE.P.S.VSTTGF.IKAVPFQN.ILNVKELGGA
Retrocopy CFRALCCNGPPPACPEYDLVCIGLMGSGKTSLLSNLCSENPDSIVSTTGFTIKAVPFQNVILNVKELGGA

Parental  DNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLILANHQDKPAARSVQE
          DNI.KYWSRY.QGSQGVI.VL.SAS.EDDLETAR.E.HSALQHPQLCTLPFL.LANHQ.KPAA.SV.E
Retrocopy DNIQKYWSRYNQGSQGVIYVLGSASLEDDLETARSEMHSALQHPQLCTLPFLMLANHQNKPAA*SVPE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1409 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1409 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000024316	1 retrocopy	retro_mluc_704,
Tursiops truncatus	ENSTTRG00000003681	1 retrocopy	retro_ttru_1409 ,