RetrogeneDB ID: retro_ttru_1442

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_113380:79278..79482(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM14A
• Ensembl ID: ENSTTRG00000015237
• Aliases: None
• Description: transmembrane protein 14A [Source:HGNC Symbol;Acc:21076]

Sequence

>retro_ttru_1442
ATGGACCTGGTTGGTTTTCGTTATGCAGCCCTGGCGGCATCCGTAAGCATTTTGGGATATAAGCAGAGAGGTGGCGTTCC
ATCTTTGATTGCTGGTCTTTTTGTTGGATTTTCGGCTGGTTATGGAGCTTACTGTGTCTCCAATGACAAGCGAGGTGTAA
AACGATCACTGTTTACAGCTTTCTTCCTGGACACCACAATGGGG

Alignment

ORF - retro_ttru_1442 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.47 %
• Parental protein coverage: 68.69 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDLIGFGYAALVTFGSILGYKRRGGVLSLIAGLSVGFLAGCGAYRVSNDKRDVKLSLFTAFFLATIMG
          MDL.GF.YAAL....SILGYK.RGGV.SLIAGL.VGF.AG.GAY.VSNDKR.VK.SLFTAFFL.T.MG
Retrocopy MDLVGFRYAALAASVSILGYKQRGGVPSLIAGLFVGFSAGYGAYCVSNDKRGVKRSLFTAFFLDTTMG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1442 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1442 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000005206	1 retrocopy	retro_btau_505,
Latimeria chalumnae	ENSLACG00000012581	1 retrocopy	retro_lcha_64,
Microcebus murinus	ENSMICG00000016339	1 retrocopy	retro_mmur_211,
Mustela putorius furo	ENSMPUG00000008935	2 retrocopies	retro_mputfur_157, retro_mputfur_586,
Sorex araneus	ENSSARG00000005516	1 retrocopy	retro_sara_307,
Tupaia belangeri	ENSTBEG00000011162	1 retrocopy	retro_tbel_1562,
Tarsius syrichta	ENSTSYG00000004269	1 retrocopy	retro_tsyr_1783,
Tursiops truncatus	ENSTTRG00000003666	2 retrocopies	retro_ttru_1504, retro_ttru_258,
Tursiops truncatus	ENSTTRG00000015237	1 retrocopy	retro_ttru_1442 ,
Vicugna pacos	ENSVPAG00000004486	1 retrocopy	retro_vpac_450,