RetrogeneDB ID: | retro_ttru_154 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_140:310319..311252(+) | ||
Located in intron of: | ENSTTRG00000006485 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GABPA | ||
Ensembl ID: | ENSTTRG00000004785 | ||
Aliases: | None | ||
Description: | GA binding protein transcription factor, alpha subunit 60kDa [Source:HGNC Symbol;Acc:4071] |
Percent Identity: | 92.04 % |
Parental protein coverage: | 69.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MTKREAEELIEIEIDGTEKPECTEESIVEQTYTPAECVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICL |
MTKREAEELIEIE.DGTEKPEC.EESIVEQTYTPAECVSQAIDINEPI.NLKKLLEPRLQCSLDA.EICL | |
Retrocopy | MTKREAEELIEIETDGTEKPECPEESIVEQTYTPAECVSQAIDINEPIDNLKKLLEPRLQCSLDAREICL |
Parental | QDIQLDPERSLFDQGVKTDGTVQLSVQVISYQGIEPKLNILEIVKPAETVEVVIDPDAHHAEAEAHLVEE |
QD.QLDPE.SLFDQGVKTDG.VQLSVQVISYQGIEPKLNILEIVKPAETVEV.IDPD...AEAEAHLVEE | |
Retrocopy | QDMQLDPE*SLFDQGVKTDGPVQLSVQVISYQGIEPKLNILEIVKPAETVEVGIDPD---AEAEAHLVEE |
Parental | AQVITLDGTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQVLHWVVWVMKEFSMTDI |
.QVITLDG.KHITTIS.ETS.QVTRWAAALEGYR..QE.LG.P.DPIQW.TDQVLHW.VWVMKEFSMTDI | |
Retrocopy | TQVITLDGIKHITTISGETSGQVTRWAAALEGYRTKQECLGVPCDPIQWCTDQVLHWGVWVMKEFSMTDI |
Parental | DLTTLNISGRELCSLNQEDFFQRVPRGEILWSHLELLRKYVLASQEQQMNEIVTIDQPVQIIPASVQSAT |
DLTTLNISGRELCSLNQEDFFQRVPR.EILWSHLELLRKYVLASQEQQMNEI.T.DQPVQIIPASVQSAT | |
Retrocopy | DLTTLNISGRELCSLNQEDFFQRVPREEILWSHLELLRKYVLASQEQQMNEIATVDQPVQIIPASVQSAT |
Parental | PTAIKAINSSAKAAKVQRAPRISGEDRSSPGNRT |
PTAIKAINSSAKAAKVQRAPRISGEDRSSPGNRT | |
Retrocopy | PTAIKAINSSAKAAKVQRAPRISGEDRSSPGNRT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000013817 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016059 | 1 retrocopy | |
Homo sapiens | ENSG00000154727 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009283 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013810 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004785 | 1 retrocopy |
retro_ttru_154 ,
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