>retro_vpac_170
GAGGGGCTGGTCTTCAGCGACGCCGAGGAAGAGGAGGGCGTGCTGCTGCGGCATCTACGGGGCCCACGGGGTCAAGTACA
GAAGGCTTAGGTGACTCAAGTGGAGAATGAAGCAAAAGATAATTCTCCACCTCGAAAGAAGCCGGCTTGGCTGGATGGAG
AAGATGAAGATGAGGAGATGGTTGACATGATGAACAATCGTTTTCGGAAAGATAGGATGAAAACGCTGCTGAAAGTAAAC
TTTCAGAAGACGAGCTACAAAAGAGGCTGAAAGAAGAATTCCAGCATGCCATGGGGGGAGTACCTGCCTGGGCAGAGACC
AACAGATGGAAAATATTTCCAGATGATGAAGGTGAAGAGGATGAAGATGATTTGTTGCAAAGGCTGGGAATTTCCTGTCC
ACATCAGTCACTCTTCCTAAAGGAATCTTGAAGACTGAAGAACTGCCAACATGCTAATGCTGAACGTCCCACCACTGTTC
GGATCTCGTCTGTGCCGTTCCATCCCTGTGCACAGGCTGTGATGGTCACTGGACTGGATAACACTGTATGGCTCTTTCAG
GTTGATGGAAAAACAAATCCTAGAATTCAGAGTATCTATTTGGAAAAGCTTCCAATCTTTAAGGCTTGTTTCAGTGCTAA
TGGAGAAAAGGTTTTAGCCACGAGCACTCACAGCGAAGTTTTTTTACGTCTATGATATGCTGGCTGAGAAGCTAATTCCT
GTGCGTCAAGTAAGAGGTTTGAAGGAGAAGATAGTGCGGAGCTTCGAAGTCTCCCCAGATGCATCCTTCTTGCTTATTAA
TGGTGTTGCTGGATATTTTCATTTGTTGTCAATGAAGACTAAAGAACTAATTGGTAGCATGAAAATTAATGGAAGGACTG
CAGCATCTACATTCTCTTCAGACAGTAAGAAAGTCTATGCCTCTTCAGGGGATGGAGAAGTTTATGTTTGGGATGTGAAC
TCTAGGAAGTGCCTTAACAGATTTGTTGATGAAGACAGTTTATATGGATTAAGCGTTGCCACATCTAGGAATGGACAGTA
TGTGGCTTGTGGTTCCAATTGTGGAGTGGTAAACATATACAGTCAAGATTCTTGTCTCTAAGAAACAAACCCAAAGCCAA
TAAAAGCTACAATGAACTTGGTTACAGGTGTTACTTCTCTGACCTTCAATCCTACTACAGAAATCTTGGCAATTGCTTCA
GAAAAAATGAAAGAAGCAGTCAGATTGGTCCACCTTCCTTCCTGTATAGGATTTTCAAGCTTCCCAGTTGTTAAAAAGAA
GAATATTTCTCTTGTTCTATGCTACGGATTTTTCTTCCAGAAGTGGATATTTTGCCTTGGGGAATGAAAAGGGCAAAGCC
CTGATGAATAAGTTGCATCATTACTCAGACTTT
ORF - retro_vpac_170 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
84.47 % |
Parental protein coverage: |
83.75 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | EELVFGDVEEDEDALLRRLQGPRVQVREDSGDSEVENEAKDDFPPQKKPVWLDEEDEDEEMIDMMNNRFR |
| E.LVF.D.EE.E..LLR.L.GPR.QV........VENEAKD..PP.KKP.WLD.EDEDEEM.DMMNNRFR |
Retrocopy | EGLVFSDAEEEEGVLLRHLRGPRGQVQK-A*VTQVENEAKDNSPPRKKPAWLDGEDEDEEMVDMMNNRFR |
|
Parental | KGMMK-NATESKLSKDELQKRLKEEFQHAMGGVPAWAETNRRKTSSDDESEEDEDDLLQR-TGNFLSTSA |
| K..MK.NA.ESKLS.DELQKRLKEEFQHAMGGVPAWAETNR.K...DDE.EEDEDDLLQR..GNFLSTS. |
Retrocopy | KDRMK<NAAESKLSEDELQKRLKEEFQHAMGGVPAWAETNRWKIFPDDEGEEDEDDLLQR<AGNFLSTSV |
|
Parental | TLPKGILK-MKNCQHANAERPTTARVSSVQFHPCAQVVMVAGLDNAVSLFQVDGKTNPKIQSIYFEKFPI |
| TLPKGILK..KNCQHANAERPTT.R.SSV.FHPCAQ.VMV.GLDN.V.LFQVDGKTNP.IQSIY.EK.PI |
Retrocopy | TLPKGILK>LKNCQHANAERPTTVRISSVPFHPCAQAVMVTGLDNTVWLFQVDGKTNPRIQSIYLEKLPI |
|
Parental | FKACFSANGEEVLATSTHSKVL-YVYDMLAGKLIPVHQVRGLKEKIVRSFEVSPDGSFLLINGVAGYLHL |
| FKACFSANGE.VLATSTHS.V..YVYDMLA.KLIPV.QVRGLKEKIVRSFEVSPD.SFLLINGVAGY.HL |
Retrocopy | FKACFSANGEKVLATSTHSEVF>YVYDMLAEKLIPVRQVRGLKEKIVRSFEVSPDASFLLINGVAGYFHL |
|
Parental | LSMKTKELIGSMKINGRIAASTFSSDSKKVYASSGDGEVYVWDVNSRKCLNRFVDEGSLYGLSIATSRNG |
| LSMKTKELIGSMKINGR.AASTFSSDSKKVYASSGDGEVYVWDVNSRKCLNRFVDE.SLYGLS.ATSRNG |
Retrocopy | LSMKTKELIGSMKINGRTAASTFSSDSKKVYASSGDGEVYVWDVNSRKCLNRFVDEDSLYGLSVATSRNG |
|
Parental | QYVACGSNCGVVNIYSQDSCLQETNPRPIKAIMNLVTGVTSLTFNPTTEILAIASEKMKEAVRLVHLPSC |
| QYVACGSNCGVVNIYSQDSCL.ETNP.PIKA.MNLVTGVTSLTFNPTTEILAIASEKMKEAVRLVHLPSC |
Retrocopy | QYVACGSNCGVVNIYSQDSCL*ETNPKPIKATMNLVTGVTSLTFNPTTEILAIASEKMKEAVRLVHLPSC |
|
Parental | TVFSNFP-VKKKNISLV-HTMDFSPRSGYFALGNEKGKALMYRLHHYSDF |
| ..FS.FP.VKKKNISLV....DFS.RSGYFALGNEKGKALM..LHHYSDF |
Retrocopy | IGFSSFPVVKKKNISLV>YATDFSSRSGYFALGNEKGKALMNKLHHYSDF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Vicugna pacos was not studied using RNA-Seq expression data.
Vicugna pacos was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_vpac_170 retrocopy.
Vicugna pacos was not studied using FANTOM5 data.
retro_vpac_170 was not experimentally validated.
Retrocopy orthology:
Vicugna pacos does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
6 parental genes, and
6 retrocopies.